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The map label for this gene is dapB [H]

Identifier: 87198030

GI number: 87198030

Start: 3158

End: 3886

Strand: Direct

Name: dapB [H]

Synonym: Saro_0004

Alternate gene names: 87198030

Gene position: 3158-3886 (Clockwise)

Preceding gene: 87198028

Following gene: 87198031

Centisome position: 0.09

GC content: 67.63

Gene sequence:

>729_bases
ATGGCCAGAATCGGAATCATCGGCAGCGCGGGGCGCATGGGCAATGCATTGCAGGCGGCAGTGGCTGCGGCAGGGCACGA
CTTTGCCGGCGGCATCGACAAGGGCGGAGATCCGCTTGAACTGGCAAAGGCCAGCGACGTGCTGGTCGACTTCTCCGCAC
CCGGCGCGCTCGAGTTCAATCTCGACGCCGCAATCCATGCAGGCGTGCCGATCGTGGTCGGAACGACGGGTCTCGAGGAA
CGCCATCACTGGCTGATCGATGCAGCCGCAGTCAGCGTGCCCGTGCTGCAGACCGGCAATACCTCGCTTGGCGTCACGCT
GCTGGCCCATCTCGTGCGCGAGGCCGCCGCGCGCCTTGGCGAGGACTGGGACATCGAGATCGTCGAGACCCATCACCGCA
TGAAGGTGGATGCCCCGTCGGGCACCGCGCTGCTGCTGGGCGAAGCGGCCGCAAAGGGGCGCGGCGTCAGCCTGGCCGAG
GAGGCCGTTCGCGGGCGCGACGGCATCACCGGTGCGCGCAAGGCTGGCACGATCGGCTTTGCCGCCCTGCGCGGCGGATC
GGTCGCGGGCGACCATTCGGTCCACTTCCTTGCCGACAACGAGCGTTTGACCTTCTCGCATCTTGCCGAGAACCGCGCGA
TTTTCGCCAAGGGCGCGATCCGGGCAGCGCAGTGGCTGCTCGATCAGGAGCCGGGTCGCTACACGATGCCCGAAGTCCTC
GGCCTCTGA

Upstream 100 bases:

>100_bases
TCGATGCCGGATTCGGCGGAAATTCCGGCGCCGGTGAGAACGACGATATTGCGCGGGCGTTTCATCGCGACCATGAAGCA
CGCCACGCAAGGGGTAAGCA

Downstream 100 bases:

>100_bases
CCCAATTGCCAATTCCGATCCGTACTGTACTATTTCAGTAATACAGTACGGGAGGAACCATGGCACTCGATCCTGCAACC
GAAGCGGCGCGGCTGGTAGA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MARIGIIGSAGRMGNALQAAVAAAGHDFAGGIDKGGDPLELAKASDVLVDFSAPGALEFNLDAAIHAGVPIVVGTTGLEE
RHHWLIDAAAVSVPVLQTGNTSLGVTLLAHLVREAAARLGEDWDIEIVETHHRMKVDAPSGTALLLGEAAAKGRGVSLAE
EAVRGRDGITGARKAGTIGFAALRGGSVAGDHSVHFLADNERLTFSHLAENRAIFAKGAIRAAQWLLDQEPGRYTMPEVL
GL

Sequences:

>Translated_242_residues
MARIGIIGSAGRMGNALQAAVAAAGHDFAGGIDKGGDPLELAKASDVLVDFSAPGALEFNLDAAIHAGVPIVVGTTGLEE
RHHWLIDAAAVSVPVLQTGNTSLGVTLLAHLVREAAARLGEDWDIEIVETHHRMKVDAPSGTALLLGEAAAKGRGVSLAE
EAVRGRDGITGARKAGTIGFAALRGGSVAGDHSVHFLADNERLTFSHLAENRAIFAKGAIRAAQWLLDQEPGRYTMPEVL
GL
>Mature_241_residues
ARIGIIGSAGRMGNALQAAVAAAGHDFAGGIDKGGDPLELAKASDVLVDFSAPGALEFNLDAAIHAGVPIVVGTTGLEER
HHWLIDAAAVSVPVLQTGNTSLGVTLLAHLVREAAARLGEDWDIEIVETHHRMKVDAPSGTALLLGEAAAKGRGVSLAEE
AVRGRDGITGARKAGTIGFAALRGGSVAGDHSVHFLADNERLTFSHLAENRAIFAKGAIRAAQWLLDQEPGRYTMPEVLG
L

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=264, Percent_Identity=39.3939393939394, Blast_Score=153, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 25024; Mature: 24892

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIGIIGSAGRMGNALQAAVAAAGHDFAGGIDKGGDPLELAKASDVLVDFSAPGALEFN
CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCEEEEE
LDAAIHAGVPIVVGTTGLEERHHWLIDAAAVSVPVLQTGNTSLGVTLLAHLVREAAARLG
CCCHHHCCCCEEEECCCCCCCCEEEEEHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCC
EDWDIEIVETHHRMKVDAPSGTALLLGEAAAKGRGVSLAEEAVRGRDGITGARKAGTIGF
CCCCEEEEECCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEE
AALRGGSVAGDHSVHFLADNERLTFSHLAENRAIFAKGAIRAAQWLLDQEPGRYTMPEVL
EEECCCCCCCCCEEEEEECCCEEEHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCHHHH
GL
CC
>Mature Secondary Structure 
ARIGIIGSAGRMGNALQAAVAAAGHDFAGGIDKGGDPLELAKASDVLVDFSAPGALEFN
CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCEEEEE
LDAAIHAGVPIVVGTTGLEERHHWLIDAAAVSVPVLQTGNTSLGVTLLAHLVREAAARLG
CCCHHHCCCCEEEECCCCCCCCEEEEEHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCC
EDWDIEIVETHHRMKVDAPSGTALLLGEAAAKGRGVSLAEEAVRGRDGITGARKAGTIGF
CCCCEEEEECCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEE
AALRGGSVAGDHSVHFLADNERLTFSHLAENRAIFAKGAIRAAQWLLDQEPGRYTMPEVL
EEECCCCCCCCCEEEEEECCCEEEHHHHHCCCEEEEHHHHHHHHHHHCCCCCCCCCHHHH
GL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA