| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86751786
Identifier: 86751786
GI number: 86751786
Start: 5304639
End: 5305727
Strand: Direct
Name: 86751786
Synonym: RPB_4688
Alternate gene names: NA
Gene position: 5304639-5305727 (Clockwise)
Preceding gene: 86751785
Following gene: 86751787
Centisome position: 99.49
GC content: 68.87
Gene sequence:
>1089_bases ATGAGCGCTAGCCACCCGATCTCACGCCGTGCGGTCGCCGGCGGCCTGCTCGCGCTCAGCCTCGGCGGATCGCGCGCGCT CGCGCAAGGCTTCGCGGGGCTCGGCAGCGAGGCCGGCGAATTCGCCCCCGTCGTTCCCGGACGGGTGCTGAGCTTCCCGG CCGACCACGGCGCCCACCCGGATTTCCGCATCGAATGGTGGTACCTGACGGCGAATCTGCAGGGCGCGGACGGCAAGCCC TACGGCGTGCAGTGGACGCTGTTCCGGCAGGCGATGACGCCGGGACCGCAGCGCGAAGGCTGGGCCAATCAGCAGGTCTG GATGGCGCATGCGGCGCTCTCCAGCGCCGAGACGCATCGCTTCGCCGAGAAATTTTCCCGCGGCGGCATCGGTCAGGCCG GCGTGTCCGCCGCGCCGTTTCGCGCCTTCATCGACGACTGGCAGATGACCGGCGGCGACGCGATGGACGCGGCGACGCTG TCGCCGCTCGACGTCACCGCGACCGGTGCGGATTTCGGCTACCGGCTGCGCCTCACCGCCGAGCGGCCGCTGGTGCTGCA GGGCGACGCCGGCTATTCGCGCAAATCCGAGCGCGGGCAGGCCTCGTATTATTACAGTCAGCCCTATTTCGCCGCGCGCG GGACGCTGACGTTGGACGGCCGGCCGATCGAGGTCAGCGGCACCGCCTGGATGGACCGCGAATTCTCCAGCCAGCCGCTG GCGTCGGACCAGACCGGCTGGGACTGGTTCTCGCTGCATCTCGCCTCCGGCGAGAAAGTGATGCTGTTCCGGCTGCGCCA GAGCGACGGCAACGCCTATTTCGCCGGCAACTGGATCGGGCTCGACGGGCGGTCCGAACAGCTCGCGCCGGACGCCATCG TGCTCGATCCGATCGGCTTCACCGACACCGCCGGCCGCAAACTGCCGACATCCTGGCGTGTCCGTGTGCCGGTGCGCGGT CTTGCGATCGAGACCGCACCGCTCAACCCGAACGCCTGGATGGGCACCAGCTTTCCCTATTGGGAGGGGCCGATTTCGTT CAGCGGTAGCCAGAGCGGCAACGGATATCTTGAGATGACCGGCTATTGA
Upstream 100 bases:
>100_bases CTGCTCGGCGTCGCGCTGCTGGCATCGCTGATCGCGGCGGCGCTGCCGATCCTCAAGCTGCTGCGGATGCAGCCGGCGCA ACTGGTGAAGGTGTTCGCCG
Downstream 100 bases:
>100_bases GTTCAAGCTGGCGGCAACCGGCGGCTTCAGCCGGACAGAATGAATCATATCGTTGGGAGCCCTGGGATGTTTCACTACAC CACGATCGCGACCCTGCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Hydrolase; Hydrolase; Lipoprotein; ABC Transporter Type C Secreted Protein; Hydroxyneurosporene Synthase; ABC Transporter Lipoprotein; Secreted Hydrolase-Like; Twin-Arginine Translocation Pathway Signal; ABC-Type Transport System Hydrolase Component; Signal Peptide; Attachment Protein; Hydroxymethylglutaryl-Co A Reductase
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MSASHPISRRAVAGGLLALSLGGSRALAQGFAGLGSEAGEFAPVVPGRVLSFPADHGAHPDFRIEWWYLTANLQGADGKP YGVQWTLFRQAMTPGPQREGWANQQVWMAHAALSSAETHRFAEKFSRGGIGQAGVSAAPFRAFIDDWQMTGGDAMDAATL SPLDVTATGADFGYRLRLTAERPLVLQGDAGYSRKSERGQASYYYSQPYFAARGTLTLDGRPIEVSGTAWMDREFSSQPL ASDQTGWDWFSLHLASGEKVMLFRLRQSDGNAYFAGNWIGLDGRSEQLAPDAIVLDPIGFTDTAGRKLPTSWRVRVPVRG LAIETAPLNPNAWMGTSFPYWEGPISFSGSQSGNGYLEMTGY
Sequences:
>Translated_362_residues MSASHPISRRAVAGGLLALSLGGSRALAQGFAGLGSEAGEFAPVVPGRVLSFPADHGAHPDFRIEWWYLTANLQGADGKP YGVQWTLFRQAMTPGPQREGWANQQVWMAHAALSSAETHRFAEKFSRGGIGQAGVSAAPFRAFIDDWQMTGGDAMDAATL SPLDVTATGADFGYRLRLTAERPLVLQGDAGYSRKSERGQASYYYSQPYFAARGTLTLDGRPIEVSGTAWMDREFSSQPL ASDQTGWDWFSLHLASGEKVMLFRLRQSDGNAYFAGNWIGLDGRSEQLAPDAIVLDPIGFTDTAGRKLPTSWRVRVPVRG LAIETAPLNPNAWMGTSFPYWEGPISFSGSQSGNGYLEMTGY >Mature_361_residues SASHPISRRAVAGGLLALSLGGSRALAQGFAGLGSEAGEFAPVVPGRVLSFPADHGAHPDFRIEWWYLTANLQGADGKPY GVQWTLFRQAMTPGPQREGWANQQVWMAHAALSSAETHRFAEKFSRGGIGQAGVSAAPFRAFIDDWQMTGGDAMDAATLS PLDVTATGADFGYRLRLTAERPLVLQGDAGYSRKSERGQASYYYSQPYFAARGTLTLDGRPIEVSGTAWMDREFSSQPLA SDQTGWDWFSLHLASGEKVMLFRLRQSDGNAYFAGNWIGLDGRSEQLAPDAIVLDPIGFTDTAGRKLPTSWRVRVPVRGL AIETAPLNPNAWMGTSFPYWEGPISFSGSQSGNGYLEMTGY
Specific function: Unknown
COG id: COG5621
COG function: function code R; Predicted secreted hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39201; Mature: 39070
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASHPISRRAVAGGLLALSLGGSRALAQGFAGLGSEAGEFAPVVPGRVLSFPADHGAHP CCCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCC DFRIEWWYLTANLQGADGKPYGVQWTLFRQAMTPGPQREGWANQQVWMAHAALSSAETHR CEEEEEEEEEEEEECCCCCCCCEEEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHH FAEKFSRGGIGQAGVSAAPFRAFIDDWQMTGGDAMDAATLSPLDVTATGADFGYRLRLTA HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEC ERPLVLQGDAGYSRKSERGQASYYYSQPYFAARGTLTLDGRPIEVSGTAWMDREFSSQPL CCCEEEECCCCCCCCCCCCCEEEEECCCEEEECCEEEECCEEEEECCCEEECCCCCCCCC ASDQTGWDWFSLHLASGEKVMLFRLRQSDGNAYFAGNWIGLDGRSEQLAPDAIVLDPIGF CCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEECCCCC TDTAGRKLPTSWRVRVPVRGLAIETAPLNPNAWMGTSFPYWEGPISFSGSQSGNGYLEMT CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEC GY CC >Mature Secondary Structure SASHPISRRAVAGGLLALSLGGSRALAQGFAGLGSEAGEFAPVVPGRVLSFPADHGAHP CCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCC DFRIEWWYLTANLQGADGKPYGVQWTLFRQAMTPGPQREGWANQQVWMAHAALSSAETHR CEEEEEEEEEEEEECCCCCCCCEEEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHH FAEKFSRGGIGQAGVSAAPFRAFIDDWQMTGGDAMDAATLSPLDVTATGADFGYRLRLTA HHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEC ERPLVLQGDAGYSRKSERGQASYYYSQPYFAARGTLTLDGRPIEVSGTAWMDREFSSQPL CCCEEEECCCCCCCCCCCCCEEEEECCCEEEECCEEEECCEEEEECCCEEECCCCCCCCC ASDQTGWDWFSLHLASGEKVMLFRLRQSDGNAYFAGNWIGLDGRSEQLAPDAIVLDPIGF CCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEECCCCC TDTAGRKLPTSWRVRVPVRGLAIETAPLNPNAWMGTSFPYWEGPISFSGSQSGNGYLEMT CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEC GY CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA