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The map label for this gene is cydA [H]

Identifier: 86751768

GI number: 86751768

Start: 5282780

End: 5284186

Strand: Direct

Name: cydA [H]

Synonym: RPB_4670

Alternate gene names: 86751768

Gene position: 5282780-5284186 (Clockwise)

Preceding gene: 86751767

Following gene: 86751769

Centisome position: 99.08

GC content: 65.17

Gene sequence:

>1407_bases
ATGTTCGAATCCCTGGACCCCGTCGTTCTGGCGCGCGCGCAGTTCGCCTTTACGGTTTCGTTTCACATCATCTTCCCCGC
CTTCTCGATCGGCCTGGCGAGCTTTCTCGCCGTTCTCGAAGCGCTGTGGCTGTGGACCGGGCGCGAGGTCTTCATCAACC
TGTTCAATTACTGGCTGAAGATCTTCGCCATCGCGTTCGGCATGGGCGTCGTGTCCGGCATCGTGATGTCGTACCAGTTC
GGTACCAACTGGTCGGTGTTTTCCGACAAGACCGGGCCCGTGCTCGGCCCGCTGATGGCCTACGAGGTGCTGACGGCGTT
CTTCCTCGAGGCCGGATTCCTCGGCGTGATGCTGTTCGGCCTCAAGCGGGTCGGCCCCAAGCTGCATTTCATGGCGACGC
TGATGGTGGCGATCGGCACGCTGATGTCGGCGTTCTGGATCCTGTCGGCTAATTCCTGGATGCACACGCCGGCCGGCTAC
GCGGTCAACGCCGACGGCCAGTTCGTCGCCGCCGACTGGTTCAAGCTGATCTTCAACCCGTCGTTTCCGTATCGTCTCGT
CCATATGGTACTGGCGGCATATCTGACCACATCGCTCGTGGTCGGGGCGGTCGGCGCCTACCATCTGCTGAAGAATTCAC
GGCAGCCGGGCGCGCGGATGATGTTCTCGATGGCGATGTGGATGCTGATGATCGTCGCCCCGATCCAGATCTTCGCCGGC
GATCTCCATGGTCTCAATACGCTGGAGCACCAGCCCGCCAAGGTGATGGCGATGGAGGGGCACTACCAGAGCCACCCCGA
CGGCGCTCCCTTCATCCTGTTCGGCCTGCCGGACCAGGACGCCGCGGTGGTGCGCTATGCGCTGGAAATTCCCAAACTGT
CGTCGCTGATCCTGAAGCATTCGCTCGACGCGCCGCTCGCCGGCCTCGACACCGTGCCGCGTGAAGACTGGCCGCCGGTG
CCGATCACTTTTTGGTCGTTCCGGATCATGGTCGGGCTCGGGCTGCTGATGGCCGCGCTCGGATTTCTCGGTCTGTGGGT
GCGCTGGCGCGGCCGGCTGTACGACTCGCGGCCGACGCACCGGTTCGCGCTGATGATGGGGCCAGCCGGCTTCGTCGCGG
TGCTGGCCGGCTGGGTCACGACCGAAACCGGACGGCAGCCTTTCACCGTGTTCGGGCTGCTGCGCACGGTGGATTCGGTC
TCGCCGCTCGCCGCGCCCGCGGTGGCGTCGTCGCTGATCGCCTTCGTGATCGTGTATTTCGCCGTGTTCATCGCAGGCAC
CGTTTACATCCTGCGGCTGATGGCGCACCCGCCGCATCACGGCGAGGAGGGGCCGCCCGGCGAAACCCCCGCACGCGCCG
CCGGCATCACGCCGGCGCCCGCGATCGCCACCCGCAGGTTGGGCTGA

Upstream 100 bases:

>100_bases
CCCTGTCATCGGGTAACAGCTAGGCATCATCCTGTCGCAACGATAGGATCGTTTCGGGTGGTCTCGCGTTGTCCGCCCGT
CATGGCCGCGGATCAGTCAT

Downstream 100 bases:

>100_bases
CATGGATTACGATCTCGCGACCATCTGGGCCCTCATCATCGCGTTCGCGGTGTTCGTCTATGTGGTGATGGACGGCTTCG
ACCTCGGCCTCGGCATTCTG

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MFESLDPVVLARAQFAFTVSFHIIFPAFSIGLASFLAVLEALWLWTGREVFINLFNYWLKIFAIAFGMGVVSGIVMSYQF
GTNWSVFSDKTGPVLGPLMAYEVLTAFFLEAGFLGVMLFGLKRVGPKLHFMATLMVAIGTLMSAFWILSANSWMHTPAGY
AVNADGQFVAADWFKLIFNPSFPYRLVHMVLAAYLTTSLVVGAVGAYHLLKNSRQPGARMMFSMAMWMLMIVAPIQIFAG
DLHGLNTLEHQPAKVMAMEGHYQSHPDGAPFILFGLPDQDAAVVRYALEIPKLSSLILKHSLDAPLAGLDTVPREDWPPV
PITFWSFRIMVGLGLLMAALGFLGLWVRWRGRLYDSRPTHRFALMMGPAGFVAVLAGWVTTETGRQPFTVFGLLRTVDSV
SPLAAPAVASSLIAFVIVYFAVFIAGTVYILRLMAHPPHHGEEGPPGETPARAAGITPAPAIATRRLG

Sequences:

>Translated_468_residues
MFESLDPVVLARAQFAFTVSFHIIFPAFSIGLASFLAVLEALWLWTGREVFINLFNYWLKIFAIAFGMGVVSGIVMSYQF
GTNWSVFSDKTGPVLGPLMAYEVLTAFFLEAGFLGVMLFGLKRVGPKLHFMATLMVAIGTLMSAFWILSANSWMHTPAGY
AVNADGQFVAADWFKLIFNPSFPYRLVHMVLAAYLTTSLVVGAVGAYHLLKNSRQPGARMMFSMAMWMLMIVAPIQIFAG
DLHGLNTLEHQPAKVMAMEGHYQSHPDGAPFILFGLPDQDAAVVRYALEIPKLSSLILKHSLDAPLAGLDTVPREDWPPV
PITFWSFRIMVGLGLLMAALGFLGLWVRWRGRLYDSRPTHRFALMMGPAGFVAVLAGWVTTETGRQPFTVFGLLRTVDSV
SPLAAPAVASSLIAFVIVYFAVFIAGTVYILRLMAHPPHHGEEGPPGETPARAAGITPAPAIATRRLG
>Mature_468_residues
MFESLDPVVLARAQFAFTVSFHIIFPAFSIGLASFLAVLEALWLWTGREVFINLFNYWLKIFAIAFGMGVVSGIVMSYQF
GTNWSVFSDKTGPVLGPLMAYEVLTAFFLEAGFLGVMLFGLKRVGPKLHFMATLMVAIGTLMSAFWILSANSWMHTPAGY
AVNADGQFVAADWFKLIFNPSFPYRLVHMVLAAYLTTSLVVGAVGAYHLLKNSRQPGARMMFSMAMWMLMIVAPIQIFAG
DLHGLNTLEHQPAKVMAMEGHYQSHPDGAPFILFGLPDQDAAVVRYALEIPKLSSLILKHSLDAPLAGLDTVPREDWPPV
PITFWSFRIMVGLGLLMAALGFLGLWVRWRGRLYDSRPTHRFALMMGPAGFVAVLAGWVTTETGRQPFTVFGLLRTVDSV
SPLAAPAVASSLIAFVIVYFAVFIAGTVYILRLMAHPPHHGEEGPPGETPARAAGITPAPAIATRRLG

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=521, Percent_Identity=29.1746641074856, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=36.3924050632911, Blast_Score=220, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51260; Mature: 51260

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFESLDPVVLARAQFAFTVSFHIIFPAFSIGLASFLAVLEALWLWTGREVFINLFNYWLK
CCCCCCHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IFAIAFGMGVVSGIVMSYQFGTNWSVFSDKTGPVLGPLMAYEVLTAFFLEAGFLGVMLFG
HHHHHHHHHHHHHHHHHEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRVGPKLHFMATLMVAIGTLMSAFWILSANSWMHTPAGYAVNADGQFVAADWFKLIFNP
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEECCCCCEEHHHHHHHHHCC
SFPYRLVHMVLAAYLTTSLVVGAVGAYHLLKNSRQPGARMMFSMAMWMLMIVAPIQIFAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
DLHGLNTLEHQPAKVMAMEGHYQSHPDGAPFILFGLPDQDAAVVRYALEIPKLSSLILKH
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHH
SLDAPLAGLDTVPREDWPPVPITFWSFRIMVGLGLLMAALGFLGLWVRWRGRLYDSRPTH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RFALMMGPAGFVAVLAGWVTTETGRQPFTVFGLLRTVDSVSPLAAPAVASSLIAFVIVYF
EEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AVFIAGTVYILRLMAHPPHHGEEGPPGETPARAAGITPAPAIATRRLG
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]