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The map label for this gene is cydB [H]

Identifier: 86751769

GI number: 86751769

Start: 5284188

End: 5285192

Strand: Direct

Name: cydB [H]

Synonym: RPB_4671

Alternate gene names: 86751769

Gene position: 5284188-5285192 (Clockwise)

Preceding gene: 86751768

Following gene: 86751770

Centisome position: 99.11

GC content: 67.26

Gene sequence:

>1005_bases
ATGGATTACGATCTCGCGACCATCTGGGCCCTCATCATCGCGTTCGCGGTGTTCGTCTATGTGGTGATGGACGGCTTCGA
CCTCGGCCTCGGCATTCTGTTTCCGCTGTTTCGCACCAAGCGCGACCGCGATGTCGTGATGAACAGCGTCGCGCCGGTGT
GGGACGGCAACGAGACCTGGCTGGTGCTCGGCGGCGGCGGCCTGTTCGCGGCGTTTCCGCTGGCCTATGCGGTGCTGATG
CCGGCGCTGTATACGCCGATCATCGCGATGCTGCTCGGCCTGGTGTTTCGCGGCGTCGCGTTCGAATTTCGCTGGCGCAG
CCTGCGCGAGCGCAACCGCTGGGACCTCGCCTTCTTCCTCGGCTCGCTGATCGCGACGCTGGCGCAGGGCATCGCGCTCG
GCGCGATCCTGCAAGGCGTCGCTGTCGAGGGTCGCGCCTATGCGGGCGGATGGTGGGACTGGCTGACGCCGTTCAGCGTG
CTGACCGGGCTGGCGCTGGTGACCGGCTACGCGCTGCTCGGCGCCACCTGGCTGGTGATGAAGACCACCGGCGAACTGCG
CGACCAGGCCTATCGGCTGAGCCGCTGGCTGCTGCTGGCGATGCTGATCGCGATCGTCGCCGTCAGCGCCGCGACGCCGT
TCCTGAGCTACGACTATTCGGAACGCTGGTTCGCCTGGCCGAACGTGCTCGCCACCGCGCAAGTGCCGCTCGCCGTGGCG
ATCGTCACCGCGCTGCTGCTGCGGGCGCTGACGCAGCGCCGCGACTACCAGCCGTTCCTGCTGACGCTGTGCCTGTTCGC
GCTGTCCTATGCCGGGCTCGGCATCAGCATCTGGCCCTATGTGGTGCCGCGGAGCATCACCGTCTGGCAGGCGGCGGCGC
CCGAGAGCAGCCAGCTCTTCATGCTGGTCGGCGTCGCGATCCTGGTGCCGATCATCCTCGTCTACACAGCCTGGGCCTAT
TGGGTGTTTCGCGGCAAGGTCGACCCCGACAGCGGCTATCATTGA

Upstream 100 bases:

>100_bases
CCGCCGCATCACGGCGAGGAGGGGCCGCCCGGCGAAACCCCCGCACGCGCCGCCGGCATCACGCCGGCGCCCGCGATCGC
CACCCGCAGGTTGGGCTGAC

Downstream 100 bases:

>100_bases
TGTCCGATTTTGAACCTTCCGGCCCGCTGTCGCGACGGTTGCTATGGTTCGCAGCGCTCTGGCTCGGCGGCGTCGGTGCG
GTAGTGCTGGTGTCGATGAT

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MDYDLATIWALIIAFAVFVYVVMDGFDLGLGILFPLFRTKRDRDVVMNSVAPVWDGNETWLVLGGGGLFAAFPLAYAVLM
PALYTPIIAMLLGLVFRGVAFEFRWRSLRERNRWDLAFFLGSLIATLAQGIALGAILQGVAVEGRAYAGGWWDWLTPFSV
LTGLALVTGYALLGATWLVMKTTGELRDQAYRLSRWLLLAMLIAIVAVSAATPFLSYDYSERWFAWPNVLATAQVPLAVA
IVTALLLRALTQRRDYQPFLLTLCLFALSYAGLGISIWPYVVPRSITVWQAAAPESSQLFMLVGVAILVPIILVYTAWAY
WVFRGKVDPDSGYH

Sequences:

>Translated_334_residues
MDYDLATIWALIIAFAVFVYVVMDGFDLGLGILFPLFRTKRDRDVVMNSVAPVWDGNETWLVLGGGGLFAAFPLAYAVLM
PALYTPIIAMLLGLVFRGVAFEFRWRSLRERNRWDLAFFLGSLIATLAQGIALGAILQGVAVEGRAYAGGWWDWLTPFSV
LTGLALVTGYALLGATWLVMKTTGELRDQAYRLSRWLLLAMLIAIVAVSAATPFLSYDYSERWFAWPNVLATAQVPLAVA
IVTALLLRALTQRRDYQPFLLTLCLFALSYAGLGISIWPYVVPRSITVWQAAAPESSQLFMLVGVAILVPIILVYTAWAY
WVFRGKVDPDSGYH
>Mature_334_residues
MDYDLATIWALIIAFAVFVYVVMDGFDLGLGILFPLFRTKRDRDVVMNSVAPVWDGNETWLVLGGGGLFAAFPLAYAVLM
PALYTPIIAMLLGLVFRGVAFEFRWRSLRERNRWDLAFFLGSLIATLAQGIALGAILQGVAVEGRAYAGGWWDWLTPFSV
LTGLALVTGYALLGATWLVMKTTGELRDQAYRLSRWLLLAMLIAIVAVSAATPFLSYDYSERWFAWPNVLATAQVPLAVA
IVTALLLRALTQRRDYQPFLLTLCLFALSYAGLGISIWPYVVPRSITVWQAAAPESSQLFMLVGVAILVPIILVYTAWAY
WVFRGKVDPDSGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=372, Percent_Identity=32.7956989247312, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1787213, Length=368, Percent_Identity=33.4239130434783, Blast_Score=154, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37080; Mature: 37080

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYDLATIWALIIAFAVFVYVVMDGFDLGLGILFPLFRTKRDRDVVMNSVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEE
LVLGGGGLFAAFPLAYAVLMPALYTPIIAMLLGLVFRGVAFEFRWRSLRERNRWDLAFFL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
GSLIATLAQGIALGAILQGVAVEGRAYAGGWWDWLTPFSVLTGLALVTGYALLGATWLVM
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
KTTGELRDQAYRLSRWLLLAMLIAIVAVSAATPFLSYDYSERWFAWPNVLATAQVPLAVA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEECCCHHHHHHHHHHHH
IVTALLLRALTQRRDYQPFLLTLCLFALSYAGLGISIWPYVVPRSITVWQAAAPESSQLF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCEEEEECCCCCCCHHH
MLVGVAILVPIILVYTAWAYWVFRGKVDPDSGYH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDYDLATIWALIIAFAVFVYVVMDGFDLGLGILFPLFRTKRDRDVVMNSVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEE
LVLGGGGLFAAFPLAYAVLMPALYTPIIAMLLGLVFRGVAFEFRWRSLRERNRWDLAFFL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
GSLIATLAQGIALGAILQGVAVEGRAYAGGWWDWLTPFSVLTGLALVTGYALLGATWLVM
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
KTTGELRDQAYRLSRWLLLAMLIAIVAVSAATPFLSYDYSERWFAWPNVLATAQVPLAVA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEECCCHHHHHHHHHHHH
IVTALLLRALTQRRDYQPFLLTLCLFALSYAGLGISIWPYVVPRSITVWQAAAPESSQLF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCEEEEECCCCCCCHHH
MLVGVAILVPIILVYTAWAYWVFRGKVDPDSGYH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]