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The map label for this gene is ypdF [C]

Identifier: 86751522

GI number: 86751522

Start: 5008252

End: 5009451

Strand: Reverse

Name: ypdF [C]

Synonym: RPB_4421

Alternate gene names: 86751522

Gene position: 5009451-5008252 (Counterclockwise)

Preceding gene: 86751523

Following gene: 86751521

Centisome position: 93.96

GC content: 66.58

Gene sequence:

>1200_bases
ATGGACAGTGCAATGCTCGCCAACATCGAACGGCTCAACGCGGGAATGAAGCAGGCGTCGCTCGCCGCGCTCGTCGCGAC
GATGCCGGAAAACGTCACCTATGCGAGCGGCTTCTGGGCGATGAGCCAGTGGATCCGCCGCGGTCCGCAGGCCTATGCGC
TGCTGCCGGCGCCGGGCGGTGGAGAGCCGGCGGTGATCGCCTCGACCGGCCTGATCGATCTCGCCGCCGACTCGGAAGTC
TGGGTGAAGGATATTCGCCGCTTCGGCGGGTTTTCGGTCAACAAGGCGGAAGGCGTGGAGCTCGATGCGCAGGATCGGCG
CATCGACGCATTGCTCGCGCAGGGCGACTGCGGCGACGCCGTCAAGGCCCTTGTGAAGGTGATCAAGGACCGCGGCCTGC
AGAACGCGCGGATCGGCGTCGACGAGATCGGCATCCTGCCGCAATATTGGGATCAGCTCGCCGAGGCGCTGCCCGGCGCC
ACGCTGGTGAGGGCCGCGGACATTTTCCGCTACGGGCGGGCGATCAAGACGCCGGAGGAGATCGCGCGGCTGCGCAAGTC
GGCGCAGATCGCCGACATGTCGATCGATGCGGCGCTGGCGGTGGCCAAGGTCGGGGCCACCGAAAACGATCTGGCGCGCG
CATTTCACACCAAGACCATCGTCGAGGGTGGAATGCCCGTGCTCGGCTGCATCGGCGTCGGCGCCCGCAGTGCGGGGACC
AATGTGCAGCCGACCGATCGCGAACTGATCGCCGGCGATATCATCCGCTTCGACGTCGGCGGCCGCTACAAGCACTATCG
CGCCGATATCGCCCGCAACGGCGTGCTCGGCGAGCCGGACGCCAAGACGCGCAAGTATCATCGCGCGATCTGCGTCGGTC
TCGATCGCGCGATCGAGATGATCAAGCCGGGCGTCAAGGCGGCCGATGTGTTCAATGCCGCGGTGGAGGCCGTGCGCCGC
GAGGGCATCCCGCATTATCAGCGCAGCCATGTCGGTCACGGCATCGGCCTCGACGGCTACGACGCGCCGAACATCGCGCC
CTCCAGCAAGGACGTGTTCGAGGAGGGGATGGTGATCTGCGTCGAGACGCCGTACTACGAGATCGGTTACGCCGGTCTGC
AGGTCGAGGACACGCTGGTCGTCACCAAGGACGGCGTCGAGTCGTTCATGCTGTCGAACACGGCGCTGCGGGTGCTCTGA

Upstream 100 bases:

>100_bases
TCACCATCCGGGGACGGCACCGCAACTTGACGGCGCTGCGGAAAATCCCGTACTGTTCTTTCAATGGGAACGATGTTCCG
AAATTCGGAACGAAGCAAGT

Downstream 100 bases:

>100_bases
TGGCAAAGGTCAAAGGGCTGCAGTGCCTGCGCTGCGGCGCCCTTTATGCCCCGGATCATTACGCCGAGGACTGCCCGGCC
TGCCGGCCGGTGGTGCGGAG

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MDSAMLANIERLNAGMKQASLAALVATMPENVTYASGFWAMSQWIRRGPQAYALLPAPGGGEPAVIASTGLIDLAADSEV
WVKDIRRFGGFSVNKAEGVELDAQDRRIDALLAQGDCGDAVKALVKVIKDRGLQNARIGVDEIGILPQYWDQLAEALPGA
TLVRAADIFRYGRAIKTPEEIARLRKSAQIADMSIDAALAVAKVGATENDLARAFHTKTIVEGGMPVLGCIGVGARSAGT
NVQPTDRELIAGDIIRFDVGGRYKHYRADIARNGVLGEPDAKTRKYHRAICVGLDRAIEMIKPGVKAADVFNAAVEAVRR
EGIPHYQRSHVGHGIGLDGYDAPNIAPSSKDVFEEGMVICVETPYYEIGYAGLQVEDTLVVTKDGVESFMLSNTALRVL

Sequences:

>Translated_399_residues
MDSAMLANIERLNAGMKQASLAALVATMPENVTYASGFWAMSQWIRRGPQAYALLPAPGGGEPAVIASTGLIDLAADSEV
WVKDIRRFGGFSVNKAEGVELDAQDRRIDALLAQGDCGDAVKALVKVIKDRGLQNARIGVDEIGILPQYWDQLAEALPGA
TLVRAADIFRYGRAIKTPEEIARLRKSAQIADMSIDAALAVAKVGATENDLARAFHTKTIVEGGMPVLGCIGVGARSAGT
NVQPTDRELIAGDIIRFDVGGRYKHYRADIARNGVLGEPDAKTRKYHRAICVGLDRAIEMIKPGVKAADVFNAAVEAVRR
EGIPHYQRSHVGHGIGLDGYDAPNIAPSSKDVFEEGMVICVETPYYEIGYAGLQVEDTLVVTKDGVESFMLSNTALRVL
>Mature_399_residues
MDSAMLANIERLNAGMKQASLAALVATMPENVTYASGFWAMSQWIRRGPQAYALLPAPGGGEPAVIASTGLIDLAADSEV
WVKDIRRFGGFSVNKAEGVELDAQDRRIDALLAQGDCGDAVKALVKVIKDRGLQNARIGVDEIGILPQYWDQLAEALPGA
TLVRAADIFRYGRAIKTPEEIARLRKSAQIADMSIDAALAVAKVGATENDLARAFHTKTIVEGGMPVLGCIGVGARSAGT
NVQPTDRELIAGDIIRFDVGGRYKHYRADIARNGVLGEPDAKTRKYHRAICVGLDRAIEMIKPGVKAADVFNAAVEAVRR
EGIPHYQRSHVGHGIGLDGYDAPNIAPSSKDVFEEGMVICVETPYYEIGYAGLQVEDTLVVTKDGVESFMLSNTALRVL

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI164420681, Length=230, Percent_Identity=27.3913043478261, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788728, Length=223, Percent_Identity=27.8026905829596, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789275, Length=422, Percent_Identity=24.6445497630332, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323273, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21355531, Length=231, Percent_Identity=26.4069264069264, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 42816; Mature: 42816

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAMLANIERLNAGMKQASLAALVATMPENVTYASGFWAMSQWIRRGPQAYALLPAPGG
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCEEEEEECCCC
GEPAVIASTGLIDLAADSEVWVKDIRRFGGFSVNKAEGVELDAQDRRIDALLAQGDCGDA
CCCEEEEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHEECCCCCHH
VKALVKVIKDRGLQNARIGVDEIGILPQYWDQLAEALPGATLVRAADIFRYGRAIKTPEE
HHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH
IARLRKSAQIADMSIDAALAVAKVGATENDLARAFHTKTIVEGGMPVLGCIGVGARSAGT
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
NVQPTDRELIAGDIIRFDVGGRYKHYRADIARNGVLGEPDAKTRKYHRAICVGLDRAIEM
CCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IKPGVKAADVFNAAVEAVRREGIPHYQRSHVGHGIGLDGYDAPNIAPSSKDVFEEGMVIC
HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCEEE
VETPYYEIGYAGLQVEDTLVVTKDGVESFMLSNTALRVL
EECCCHHHCCCCEEEECEEEEECCCHHHHHHCCCHHCCC
>Mature Secondary Structure
MDSAMLANIERLNAGMKQASLAALVATMPENVTYASGFWAMSQWIRRGPQAYALLPAPGG
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCEEEEEECCCC
GEPAVIASTGLIDLAADSEVWVKDIRRFGGFSVNKAEGVELDAQDRRIDALLAQGDCGDA
CCCEEEEECCEEEECCCCHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHEECCCCCHH
VKALVKVIKDRGLQNARIGVDEIGILPQYWDQLAEALPGATLVRAADIFRYGRAIKTPEE
HHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHH
IARLRKSAQIADMSIDAALAVAKVGATENDLARAFHTKTIVEGGMPVLGCIGVGARSAGT
HHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
NVQPTDRELIAGDIIRFDVGGRYKHYRADIARNGVLGEPDAKTRKYHRAICVGLDRAIEM
CCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IKPGVKAADVFNAAVEAVRREGIPHYQRSHVGHGIGLDGYDAPNIAPSSKDVFEEGMVIC
HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCEEE
VETPYYEIGYAGLQVEDTLVVTKDGVESFMLSNTALRVL
EECCCHHHCCCCEEEECEEEEECCCHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]