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The map label for this gene is ompW [C]

Identifier: 86751426

GI number: 86751426

Start: 4907087

End: 4907776

Strand: Reverse

Name: ompW [C]

Synonym: RPB_4324

Alternate gene names: 86751426

Gene position: 4907776-4907087 (Counterclockwise)

Preceding gene: 86751427

Following gene: 86751425

Centisome position: 92.05

GC content: 63.77

Gene sequence:

>690_bases
ATGACAAAATTTCTGACTGCAGTGTCGGCGCTGGCAATGGCGGCGGCATTGAACGGCCTGCCGAGCAGCGCCGTCGCCGC
CGATCTTTCCGCCAAGCCGATCTACAAGGCTCCGGTCGTCGAGGCCTGGAATCCCTGGATGATCCGCCTGCGCGCGCTCG
GCGTGGTGACCCGCGACTCCGGCTATGTCGACCAGGTCGCCGGCTCCGGCCTGAAGACCACCGACACCTTGGTGCCGGAA
CTCGACATTTCGTACTTCTTCACCAAGAATATCGCCGCCGAACTGATCCTCGGCGTCACCAAGCACAGCGTGTCCGGCAC
CGGCACGCTCGCCAATGTCGACGTCGGCAAGGCGTGGCTGCTGCCGCCGACCCTGACGCTGCAATATCACTTCACCGAGT
TCGGCGCGTTCAAGCCCTATGTCGGCGCCGGCGTGAACTACACCTTCTTCTTCAGCCAGAAGGCCGCGGGCGGAACCGTG
GTCGAGAGCCACCTCAAGGACAGCTTCGCCCCGGCCGTGCAGATCGGCTTCGACTACATGTTCGACAAGCATTGGGGCTG
GAACGTCGACGTCAAGAAGCTGTGGCTGCGTCCGGAATGGAGCGGCACGCTGGCCGGCGGCACGCCGGTCACCGGCAAGG
TCAATCTCGACCCGTGGCTGATCGGCACCGGCATCACCTACAAGTTCTGA

Upstream 100 bases:

>100_bases
TTCGTCGTTTGATCTAGATCAAACGTGCGGGTTCCCGAGAGGCATTGGTGCACCGCGAGCGTGTGCGGTAGCTCACGCCA
ACGACATTCAAGGGGCACCT

Downstream 100 bases:

>100_bases
TCCACATCGGAATCACGGTGGCGCGGAGCGATCCGCGCCACCGTTTCGACCGGCAGCGCGCTCGAGCATTGCCAGCGCGC
CGGAACCCTGCTTGATCGGC

Product: OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTKFLTAVSALAMAAALNGLPSSAVAADLSAKPIYKAPVVEAWNPWMIRLRALGVVTRDSGYVDQVAGSGLKTTDTLVPE
LDISYFFTKNIAAELILGVTKHSVSGTGTLANVDVGKAWLLPPTLTLQYHFTEFGAFKPYVGAGVNYTFFFSQKAAGGTV
VESHLKDSFAPAVQIGFDYMFDKHWGWNVDVKKLWLRPEWSGTLAGGTPVTGKVNLDPWLIGTGITYKF

Sequences:

>Translated_229_residues
MTKFLTAVSALAMAAALNGLPSSAVAADLSAKPIYKAPVVEAWNPWMIRLRALGVVTRDSGYVDQVAGSGLKTTDTLVPE
LDISYFFTKNIAAELILGVTKHSVSGTGTLANVDVGKAWLLPPTLTLQYHFTEFGAFKPYVGAGVNYTFFFSQKAAGGTV
VESHLKDSFAPAVQIGFDYMFDKHWGWNVDVKKLWLRPEWSGTLAGGTPVTGKVNLDPWLIGTGITYKF
>Mature_228_residues
TKFLTAVSALAMAAALNGLPSSAVAADLSAKPIYKAPVVEAWNPWMIRLRALGVVTRDSGYVDQVAGSGLKTTDTLVPEL
DISYFFTKNIAAELILGVTKHSVSGTGTLANVDVGKAWLLPPTLTLQYHFTEFGAFKPYVGAGVNYTFFFSQKAAGGTVV
ESHLKDSFAPAVQIGFDYMFDKHWGWNVDVKKLWLRPEWSGTLAGGTPVTGKVNLDPWLIGTGITYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=168, Percent_Identity=34.5238095238095, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24740; Mature: 24608

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKFLTAVSALAMAAALNGLPSSAVAADLSAKPIYKAPVVEAWNPWMIRLRALGVVTRDS
CCHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCHHEEEEEEEEEEECCC
GYVDQVAGSGLKTTDTLVPELDISYFFTKNIAAELILGVTKHSVSGTGTLANVDVGKAWL
CCHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEE
LPPTLTLQYHFTEFGAFKPYVGAGVNYTFFFSQKAAGGTVVESHLKDSFAPAVQIGFDYM
CCCEEEEEEEEHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECEEEE
FDKHWGWNVDVKKLWLRPEWSGTLAGGTPVTGKVNLDPWLIGTGITYKF
EECCCCCCCCEEEEEECCCCCCEECCCCCCEEEEECCCEEEECCEEECC
>Mature Secondary Structure 
TKFLTAVSALAMAAALNGLPSSAVAADLSAKPIYKAPVVEAWNPWMIRLRALGVVTRDS
CHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCHHEEEEEEEEEEECCC
GYVDQVAGSGLKTTDTLVPELDISYFFTKNIAAELILGVTKHSVSGTGTLANVDVGKAWL
CCHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEE
LPPTLTLQYHFTEFGAFKPYVGAGVNYTFFFSQKAAGGTVVESHLKDSFAPAVQIGFDYM
CCCEEEEEEEEHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEECEEEE
FDKHWGWNVDVKKLWLRPEWSGTLAGGTPVTGKVNLDPWLIGTGITYKF
EECCCCCCCCEEEEEECCCCCCEECCCCCCEEEEECCCEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]