| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is clpB [H]
Identifier: 86751350
GI number: 86751350
Start: 4831092
End: 4833731
Strand: Reverse
Name: clpB [H]
Synonym: RPB_4247
Alternate gene names: 86751350
Gene position: 4833731-4831092 (Counterclockwise)
Preceding gene: 86751353
Following gene: 86751347
Centisome position: 90.66
GC content: 66.7
Gene sequence:
>2640_bases ATGAATCCAGAAAAATACACCGAACGCGTGCGCGGCTTCGTCCAGTCGGCGCAATCCCTGGCGGTCCGCGAGGGCCATCA GCAATTCTCGCCGCTGCATATTCTCAAAGTCCTGCTCGATGATTCCGAGGGGCTGGCCGGCGGTCTGATCGACCGCTCCG GCGGCAATTCCCGCGCGATCCTGAAGGCGACCGAAGACGCGCTCGGCAAGATGCCGAAGGTCTCCGGCTCGGGCGCCGGC CAGGTCTATCTGGCGCCGGCGACGGCGCGCGCGCTCGACGGCGCCGAGCAGGCCGCCGAAAAGGCCGGCGACAGCTTCGT CACCGTGGAGCGGCTGCTGCTGGCGCTGTCGCTCGACAAAGATTCCGAGGCCGGGCAGTTGCTCGCCAAGGGCGGCGTCA CCCCGCAGAATCTCAACGCCGCGATCAACGCGCTGCGCAAGGGCCGCACCGCGGACAGCGCCACGGCCGAAAACGCCTAT GACGCGCTGAAGAAATACGCCCGGGATCTCACCCAGGCGGCGCGCGACGGCAAGCTCGACCCGGTGATCGGCCGCGACGA GGAAATCCGCCGGACGATCCAGGTGCTGTCGCGCCGCACCAAGAACAATCCCGTCCTGATCGGCGAACCCGGCGTCGGCA AGACCGCGATCGTCGAGGGTCTGGCGCTGCGCATCCTCAATGGCGACGTGCCGGAGAGCCTGAAGGACAAGAAGCTGCTG GCGCTCGACATGGGCGCGCTGATCGCGGGCGCGAAATATCGCGGCGAGTTCGAGGAGCGGCTGAAGGCCGTGCTCAACGA GGTCACCGCGGCCGCCGGCGGCATCGTGCTGTTCATCGACGAGATGCACACGCTGGTCGGCGCCGGCAAGGCCGACGGCG CGATGGATGCGTCCAATCTGCTGAAGCCCGCGCTGGCGCGCGGCGAGCTGCACTGCATCGGCGCCACCACGCTCGATGAA TATCGCAAGCACGTCGAGAAGGACGCCGCTTTGGCGCGGCGGTTCCAGCCGGTGTTCGTGTCCGAGCCGACCGTCGAGGA CACCATCTCGATCCTGCGCGGCCTGAAGGACAAATACGAGCAGCATCACGGCGTGCGCATTGCCGATTCGGCGCTGGTGG CCGCCACCACGCTGTCGAATCGCTACATCACCGATCGCTTCCTGCCCGACAAGGCGATCGACCTGATGGACGAGGCCGCG GCGCGGCTGAAGATGCAGGTCGATTCCAAGCCGGAAGAACTCGATTCGATGGACCGCGAGATCGTGCGGCTCAAGATCGA GCAGGAGGCGCTGAAGAAGGAGAGCGACGCCGGCTCCAAATCGCGCCTCGTCACGCTGGAAAAGGAGCTCGCCGATCTCG AGGAGAAGTCGGCCGCGCTGACGCAGCGCTGGAGCGCGGAGAAGAACAAGCTCTCGGACGCCCAGAAGCTGAAGAGCGAG CTCGACGGGTTGCGGCTCGAACTCGCCGACGCGCAGCGTCGCGGCGAGTATCAGCGCGCCGGCGAACTGGCCTATGGCCG GATCCCGGAGCTGGAGAAGCGGCTTGCGGACATCGAAGCCAACGAGAATGCCGGCGAGATGATGGAGGAGGCGGTCACCG CCGATCACATCGCCCAGGTGGTGTCGCGCTGGACCGGCGTGCCGGTCGACAAGATGCTCGAGGGCGAGAAGGAAAAGCTG CTGCGGATGGAAGAGCAGATCGGCAAGCGCGTGGTCGGCCAGTTCGAGGCCGTGCATGCGGTGTCGACCGCGGTCCGTCG TGCGAGGGCCGGGCTGCAGGACCCGAACCGGCCGATGGGCTCGTTCATGTTCTTGGGGCCCACCGGCGTCGGCAAGACCG AGCTGACCAAGGCGCTGGCGCAATATCTGTTCGACGACGAGACTGCGATGGTCCGGCTCGACATGTCGGAATACATGGAG AAGCACTCGGTCGCCCGGCTGATCGGCGCGCCTCCGGGCTATGTCGGCTACGACGAGGGCGGCGCGCTTACCGAAGCGGT GCGGCGCCGGCCGTATCAGGTGGTGCTGTTCGACGAGATCGAGAAGGCGCATCCGGACGTGTTCAACGTGCTGCTGCAGG TGCTCGACGACGGCCGCCTGACCGACGGGCAGGGCCGCACCGTCGACTTCCGCAACACGCTGATCGTGATGACGTCGAAT CTCGGCTCGGAATATCTGGTCAACCAGCCCGAGGGCGAGGACACCGGGGTGGTGCGCGAACAGGTGATGGACATGGTGCG GGCGCATTTCCGGCCGGAATTCCTCAACCGGGTCGACGAGATCATCCTGTTCCACCGCCTGCAGAAGAACGAAATGGGCC GGATCGTCGACATCCAGTTCAGCCGGCTGGCGAAGCTGCTGGAGGATCGCAAGATCGTGCTCGATCTCGACCCCGCCGCG CGCGACTGGCTCGCCGAGAAGGGCTGGGACCCCGCCTATGGGGCGCGTCCCCTGAAGCGGGTGATCCAGCGCCATGTGCA GGACCCGCTCGCCGAGATGATCCTCGACGGCACCGTCAGCGACGGCGCGAAGGTGGCGATCTCGACCGAAGGCGGCGTCC TGACCTTCAACGGCGCCCCGCCGCACACCGCCGATGTCGAGCCGTTCCCCGGGCGTCCGCCGAAGCGGATGCTGAACTGA
Upstream 100 bases:
>100_bases CGCCGCCGGCTGAGGAATGTCAGCGCGGCCGGTGGAACCCCAATGAAGATGCCGTCCGCGTGCTTTCGAGGCGCCGATGG CAGGCTGAGGGACACCCAAC
Downstream 100 bases:
>100_bases GGCGAGGCAAAGTGCGGGCGGAATTTCCGCACGCACTTTGAGAAGTCACAAATCGTCATGGCCGGGCTCGTCCCGGCCAT CCGCATTTTGAGACCGCGCG
Product: AAA_5 ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MNPEKYTERVRGFVQSAQSLAVREGHQQFSPLHILKVLLDDSEGLAGGLIDRSGGNSRAILKATEDALGKMPKVSGSGAG QVYLAPATARALDGAEQAAEKAGDSFVTVERLLLALSLDKDSEAGQLLAKGGVTPQNLNAAINALRKGRTADSATAENAY DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL ALDMGALIAGAKYRGEFEERLKAVLNEVTAAAGGIVLFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCIGATTLDE YRKHVEKDAALARRFQPVFVSEPTVEDTISILRGLKDKYEQHHGVRIADSALVAATTLSNRYITDRFLPDKAIDLMDEAA ARLKMQVDSKPEELDSMDREIVRLKIEQEALKKESDAGSKSRLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSE LDGLRLELADAQRRGEYQRAGELAYGRIPELEKRLADIEANENAGEMMEEAVTADHIAQVVSRWTGVPVDKMLEGEKEKL LRMEEQIGKRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAQYLFDDETAMVRLDMSEYME KHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSN LGSEYLVNQPEGEDTGVVREQVMDMVRAHFRPEFLNRVDEIILFHRLQKNEMGRIVDIQFSRLAKLLEDRKIVLDLDPAA RDWLAEKGWDPAYGARPLKRVIQRHVQDPLAEMILDGTVSDGAKVAISTEGGVLTFNGAPPHTADVEPFPGRPPKRMLN
Sequences:
>Translated_879_residues MNPEKYTERVRGFVQSAQSLAVREGHQQFSPLHILKVLLDDSEGLAGGLIDRSGGNSRAILKATEDALGKMPKVSGSGAG QVYLAPATARALDGAEQAAEKAGDSFVTVERLLLALSLDKDSEAGQLLAKGGVTPQNLNAAINALRKGRTADSATAENAY DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL ALDMGALIAGAKYRGEFEERLKAVLNEVTAAAGGIVLFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCIGATTLDE YRKHVEKDAALARRFQPVFVSEPTVEDTISILRGLKDKYEQHHGVRIADSALVAATTLSNRYITDRFLPDKAIDLMDEAA ARLKMQVDSKPEELDSMDREIVRLKIEQEALKKESDAGSKSRLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSE LDGLRLELADAQRRGEYQRAGELAYGRIPELEKRLADIEANENAGEMMEEAVTADHIAQVVSRWTGVPVDKMLEGEKEKL LRMEEQIGKRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAQYLFDDETAMVRLDMSEYME KHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSN LGSEYLVNQPEGEDTGVVREQVMDMVRAHFRPEFLNRVDEIILFHRLQKNEMGRIVDIQFSRLAKLLEDRKIVLDLDPAA RDWLAEKGWDPAYGARPLKRVIQRHVQDPLAEMILDGTVSDGAKVAISTEGGVLTFNGAPPHTADVEPFPGRPPKRMLN >Mature_879_residues MNPEKYTERVRGFVQSAQSLAVREGHQQFSPLHILKVLLDDSEGLAGGLIDRSGGNSRAILKATEDALGKMPKVSGSGAG QVYLAPATARALDGAEQAAEKAGDSFVTVERLLLALSLDKDSEAGQLLAKGGVTPQNLNAAINALRKGRTADSATAENAY DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL ALDMGALIAGAKYRGEFEERLKAVLNEVTAAAGGIVLFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCIGATTLDE YRKHVEKDAALARRFQPVFVSEPTVEDTISILRGLKDKYEQHHGVRIADSALVAATTLSNRYITDRFLPDKAIDLMDEAA ARLKMQVDSKPEELDSMDREIVRLKIEQEALKKESDAGSKSRLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSE LDGLRLELADAQRRGEYQRAGELAYGRIPELEKRLADIEANENAGEMMEEAVTADHIAQVVSRWTGVPVDKMLEGEKEKL LRMEEQIGKRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAQYLFDDETAMVRLDMSEYME KHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSN LGSEYLVNQPEGEDTGVVREQVMDMVRAHFRPEFLNRVDEIILFHRLQKNEMGRIVDIQFSRLAKLLEDRKIVLDLDPAA RDWLAEKGWDPAYGARPLKRVIQRHVQDPLAEMILDGTVSDGAKVAISTEGGVLTFNGAPPHTADVEPFPGRPPKRMLN
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=356, Percent_Identity=35.3932584269663, Blast_Score=211, Evalue=2e-54, Organism=Escherichia coli, GI1788943, Length=844, Percent_Identity=57.8199052132701, Blast_Score=981, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=345, Percent_Identity=44.0579710144928, Blast_Score=288, Evalue=7e-79, Organism=Saccharomyces cerevisiae, GI6320464, Length=692, Percent_Identity=56.0693641618497, Blast_Score=798, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=870, Percent_Identity=44.2528735632184, Blast_Score=695, Evalue=0.0,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR017730 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 96553; Mature: 96553
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPEKYTERVRGFVQSAQSLAVREGHQQFSPLHILKVLLDDSEGLAGGLIDRSGGNSRAI CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEECCCCCCCEE LKATEDALGKMPKVSGSGAGQVYLAPATARALDGAEQAAEKAGDSFVTVERLLLALSLDK EEECHHHHCCCCCCCCCCCCEEEECCHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCC DSEAGQLLAKGGVTPQNLNAAINALRKGRTADSATAENAYDALKKYARDLTQAARDGKLD CCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHCCCEEH ALDMGALIAGAKYRGEFEERLKAVLNEVTAAAGGIVLFIDEMHTLVGAGKADGAMDASNL HEEHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCHHHH LKPALARGELHCIGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTISILRGLKDKYE HHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH QHHGVRIADSALVAATTLSNRYITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMDRE HHCCCEEECCHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH IVRLKIEQEALKKESDAGSKSRLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSE HHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDGLRLELADAQRRGEYQRAGELAYGRIPELEKRLADIEANENAGEMMEEAVTADHIAQV HCCCEEEEHHHHHCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VSRWTGVPVDKMLEGEKEKLLRMEEQIGKRVVGQFEAVHAVSTAVRRARAGLQDPNRPMG HHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC SFMFLGPTGVGKTELTKALAQYLFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYDEG CEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCC GALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSN CHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECC LGSEYLVNQPEGEDTGVVREQVMDMVRAHFRPEFLNRVDEIILFHRLQKNEMGRIVDIQF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECH SRLAKLLEDRKIVLDLDPAARDWLAEKGWDPAYGARPLKRVIQRHVQDPLAEMILDGTVS HHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC DGAKVAISTEGGVLTFNGAPPHTADVEPFPGRPPKRMLN CCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHCC >Mature Secondary Structure MNPEKYTERVRGFVQSAQSLAVREGHQQFSPLHILKVLLDDSEGLAGGLIDRSGGNSRAI CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEECCCCCCCEE LKATEDALGKMPKVSGSGAGQVYLAPATARALDGAEQAAEKAGDSFVTVERLLLALSLDK EEECHHHHCCCCCCCCCCCCEEEECCHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCC DSEAGQLLAKGGVTPQNLNAAINALRKGRTADSATAENAYDALKKYARDLTQAARDGKLD CCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCHHCCCEEH ALDMGALIAGAKYRGEFEERLKAVLNEVTAAAGGIVLFIDEMHTLVGAGKADGAMDASNL HEEHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCHHHH LKPALARGELHCIGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTISILRGLKDKYE HHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH QHHGVRIADSALVAATTLSNRYITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMDRE HHCCCEEECCHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH IVRLKIEQEALKKESDAGSKSRLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSE HHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDGLRLELADAQRRGEYQRAGELAYGRIPELEKRLADIEANENAGEMMEEAVTADHIAQV HCCCEEEEHHHHHCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VSRWTGVPVDKMLEGEKEKLLRMEEQIGKRVVGQFEAVHAVSTAVRRARAGLQDPNRPMG HHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC SFMFLGPTGVGKTELTKALAQYLFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYDEG CEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCC GALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSN CHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEECC LGSEYLVNQPEGEDTGVVREQVMDMVRAHFRPEFLNRVDEIILFHRLQKNEMGRIVDIQF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECH SRLAKLLEDRKIVLDLDPAARDWLAEKGWDPAYGARPLKRVIQRHVQDPLAEMILDGTVS HHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC DGAKVAISTEGGVLTFNGAPPHTADVEPFPGRPPKRMLN CCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA