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The map label for this gene is crtD [H]

Identifier: 86751113

GI number: 86751113

Start: 4571884

End: 4573434

Strand: Direct

Name: crtD [H]

Synonym: RPB_4005

Alternate gene names: 86751113

Gene position: 4571884-4573434 (Clockwise)

Preceding gene: 86751095

Following gene: 86751114

Centisome position: 85.75

GC content: 69.57

Gene sequence:

>1551_bases
TTGAGGGATCAGACCGCAAAGAATCGCGTGGTGGTGATCGGTGCCGGCGTGGCCGGACTGACCTCCGCTCTCGCCCTGTC
GGCGCGCGGCCTCGACGTGACCGTGGTCGAGCGCGCCGCGACGCCGGGCGGCAAGATCCGCGAGGTCGGCATCGGCGCGG
CGCGGATCGACAGCGGCCCCACCGTCTTCACCATGCGCTGGGTGTTCGAGGAATTGTTCGCCGCGGCCAAGCTGAACTTC
GCCGATCACGTCCGGCTGCGGCCGCTGTCGGTGCTGGCGCGCCATGCCTGGAACGAGGCCACGCGACTCGATCTGTTCGC
CGACGAGGCGCGCTCGGCGGATGCGATCGGCGTGTTCGCCGGCCCGGCCGAGGCGAAGCGCTACCGACAATTCTGCGCCG
ACAGCCGGCGGATCTATCAGATCCTAGAACAACCGTTCCTGCGCGCCACCGCGCCGAGCCTGCCCAGCCTCGCCACCGCC
AACGGCCTCGGCGGGCTGCTGGAGTTGCGCAAGATCCGCCCGTTCACCACGATGTGGAACGCGCTCGGCGACTACTTCCG
CGATCCACGCCTGCGGCAATTGTTCGGGCGCTATTCGACTTATTGCGGATCCTCGCCGTTCCAGGCGCCGGCGACGCTGA
TGCTGGTCGCGCATGTCGAGCAGCAGGGCGTCTGGATCATCGAGGGCGGCATGCATGCGCTGGCGCGCGCGCTGGCCGAT
TGCGCGGCGTCGCAAGGCGCCAGCATTCGCTACGATCAGGAGGTGCGCGAGATCATGGTCTCGGGCGGCCGCGCCGCCGG
GGTGATTCTCGCCAGCGGCGAACGCATCGAAGCGCAATCGGTGATCGTCAACGCCGATGTCGGCGCCCTGCCCGGCGGCC
TGTTCGGCGACCAGGTGCAACGCGCCGTGCCGCCGCTGGCGCCGAAGCTGCGGTCGCTGTCGGCGATGACCTGGAGTATG
GTGGCGAAGACCGAGGGTTTTCCGCTCAGCCGGCATTCGGTGTTCTTCTCCCGCGACTACGCGCGCGAATTCAACGATAT
CTTCCAGCGCGGCGAAGTGCCGAGCGAGCCGACCGTCTATGTCTGCGGTCAGGACCGAATCGACGACGACGCGCGGCTCG
GCGATGGCGGCGAGGAAGAACTGCTGGTGCTGATCAACGCGCCGCCTGTCGGCGATCGCAAACCGTTCGATGAGGCCGAG
ATCGCGCGTTGCGCGGAGCGCACGTTCGACGTGCTGGAACGCTGCGGGTTGCGCATCCGGCTTCAGCCTGACAAAACCAC
GGTGACCACGCCCGCCGATTTCAACCGGCTGTTTCCGGCGACCGGCGGGGCGCTGTACGGCCGCGCCTCGCACGGCTGGA
CCGCCTCGTTCGAGCGCCCCGGCGCACGGACGAAAATCCCCGGCCTGTATCTCGCCGGCGGCAGCACCCATCCCGGCCCC
GGCGTGCCGATGGCCGGCCTGTCCGGGCGCGCCGCCGCGGCGAGCCTCGTGGCCGACCTCGAGGCCGAGCTGCAGGGCTT
GAAGCCGATGCTGCGGCCGGCCGCCACCTGA

Upstream 100 bases:

>100_bases
AGCAAGTGTCAATTTGACTTGTCATACGCGACTGTAAATTATTATGGACACGTGTCAATGACATGGCGCAATGACACTTA
AGGCGAAGCGGGAGTCGGAC

Downstream 100 bases:

>100_bases
ACCGACGCGCGACACTCACCGCGCAAGTACAAAGCACACGAATCGATGATTGCCTGGCCCAACGAGACCGACGAACGCCG
CGCCGGATTCAACCTCGACG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MRDQTAKNRVVVIGAGVAGLTSALALSARGLDVTVVERAATPGGKIREVGIGAARIDSGPTVFTMRWVFEELFAAAKLNF
ADHVRLRPLSVLARHAWNEATRLDLFADEARSADAIGVFAGPAEAKRYRQFCADSRRIYQILEQPFLRATAPSLPSLATA
NGLGGLLELRKIRPFTTMWNALGDYFRDPRLRQLFGRYSTYCGSSPFQAPATLMLVAHVEQQGVWIIEGGMHALARALAD
CAASQGASIRYDQEVREIMVSGGRAAGVILASGERIEAQSVIVNADVGALPGGLFGDQVQRAVPPLAPKLRSLSAMTWSM
VAKTEGFPLSRHSVFFSRDYAREFNDIFQRGEVPSEPTVYVCGQDRIDDDARLGDGGEEELLVLINAPPVGDRKPFDEAE
IARCAERTFDVLERCGLRIRLQPDKTTVTTPADFNRLFPATGGALYGRASHGWTASFERPGARTKIPGLYLAGGSTHPGP
GVPMAGLSGRAAAASLVADLEAELQGLKPMLRPAAT

Sequences:

>Translated_516_residues
MRDQTAKNRVVVIGAGVAGLTSALALSARGLDVTVVERAATPGGKIREVGIGAARIDSGPTVFTMRWVFEELFAAAKLNF
ADHVRLRPLSVLARHAWNEATRLDLFADEARSADAIGVFAGPAEAKRYRQFCADSRRIYQILEQPFLRATAPSLPSLATA
NGLGGLLELRKIRPFTTMWNALGDYFRDPRLRQLFGRYSTYCGSSPFQAPATLMLVAHVEQQGVWIIEGGMHALARALAD
CAASQGASIRYDQEVREIMVSGGRAAGVILASGERIEAQSVIVNADVGALPGGLFGDQVQRAVPPLAPKLRSLSAMTWSM
VAKTEGFPLSRHSVFFSRDYAREFNDIFQRGEVPSEPTVYVCGQDRIDDDARLGDGGEEELLVLINAPPVGDRKPFDEAE
IARCAERTFDVLERCGLRIRLQPDKTTVTTPADFNRLFPATGGALYGRASHGWTASFERPGARTKIPGLYLAGGSTHPGP
GVPMAGLSGRAAAASLVADLEAELQGLKPMLRPAAT
>Mature_516_residues
MRDQTAKNRVVVIGAGVAGLTSALALSARGLDVTVVERAATPGGKIREVGIGAARIDSGPTVFTMRWVFEELFAAAKLNF
ADHVRLRPLSVLARHAWNEATRLDLFADEARSADAIGVFAGPAEAKRYRQFCADSRRIYQILEQPFLRATAPSLPSLATA
NGLGGLLELRKIRPFTTMWNALGDYFRDPRLRQLFGRYSTYCGSSPFQAPATLMLVAHVEQQGVWIIEGGMHALARALAD
CAASQGASIRYDQEVREIMVSGGRAAGVILASGERIEAQSVIVNADVGALPGGLFGDQVQRAVPPLAPKLRSLSAMTWSM
VAKTEGFPLSRHSVFFSRDYAREFNDIFQRGEVPSEPTVYVCGQDRIDDDARLGDGGEEELLVLINAPPVGDRKPFDEAE
IARCAERTFDVLERCGLRIRLQPDKTTVTTPADFNRLFPATGGALYGRASHGWTASFERPGARTKIPGLYLAGGSTHPGP
GVPMAGLSGRAAAASLVADLEAELQGLKPMLRPAAT

Specific function: Converts hydroxyneurosporene to demethylspheroidene or methoxyneurosporene to spheroidene [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17540238, Length=530, Percent_Identity=23.0188679245283, Blast_Score=88, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR000815
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 55559; Mature: 55559

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDQTAKNRVVVIGAGVAGLTSALALSARGLDVTVVERAATPGGKIREVGIGAARIDSGP
CCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCEEECCCC
TVFTMRWVFEELFAAAKLNFADHVRLRPLSVLARHAWNEATRLDLFADEARSADAIGVFA
CEEEHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCCEEEEEHHHCCCCCEEEEEC
GPAEAKRYRQFCADSRRIYQILEQPFLRATAPSLPSLATANGLGGLLELRKIRPFTTMWN
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHH
ALGDYFRDPRLRQLFGRYSTYCGSSPFQAPATLMLVAHVEQQGVWIIEGGMHALARALAD
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCCEEEEECCHHHHHHHHHH
CAASQGASIRYDQEVREIMVSGGRAAGVILASGERIEAQSVIVNADVGALPGGLFGDQVQ
HHHCCCCCEEEHHHHHHHHHCCCCEEEEEEECCCEEEECEEEEECCCCCCCCCCCHHHHH
RAVPPLAPKLRSLSAMTWSMVAKTEGFPLSRHSVFFSRDYAREFNDIFQRGEVPSEPTVY
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEE
VCGQDRIDDDARLGDGGEEELLVLINAPPVGDRKPFDEAEIARCAERTFDVLERCGLRIR
ECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
LQPDKTTVTTPADFNRLFPATGGALYGRASHGWTASFERPGARTKIPGLYLAGGSTHPGP
ECCCCCEEECCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
GVPMAGLSGRAAAASLVADLEAELQGLKPMLRPAAT
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCC
>Mature Secondary Structure
MRDQTAKNRVVVIGAGVAGLTSALALSARGLDVTVVERAATPGGKIREVGIGAARIDSGP
CCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCEEECCCC
TVFTMRWVFEELFAAAKLNFADHVRLRPLSVLARHAWNEATRLDLFADEARSADAIGVFA
CEEEHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCCEEEEEHHHCCCCCEEEEEC
GPAEAKRYRQFCADSRRIYQILEQPFLRATAPSLPSLATANGLGGLLELRKIRPFTTMWN
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHH
ALGDYFRDPRLRQLFGRYSTYCGSSPFQAPATLMLVAHVEQQGVWIIEGGMHALARALAD
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCCEEEEECCHHHHHHHHHH
CAASQGASIRYDQEVREIMVSGGRAAGVILASGERIEAQSVIVNADVGALPGGLFGDQVQ
HHHCCCCCEEEHHHHHHHHHCCCCEEEEEEECCCEEEECEEEEECCCCCCCCCCCHHHHH
RAVPPLAPKLRSLSAMTWSMVAKTEGFPLSRHSVFFSRDYAREFNDIFQRGEVPSEPTVY
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEE
VCGQDRIDDDARLGDGGEEELLVLINAPPVGDRKPFDEAEIARCAERTFDVLERCGLRIR
ECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
LQPDKTTVTTPADFNRLFPATGGALYGRASHGWTASFERPGARTKIPGLYLAGGSTHPGP
ECCCCCEEECCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
GVPMAGLSGRAAAASLVADLEAELQGLKPMLRPAAT
CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1612412; 7721699 [H]