Click here to switch to the map view.

The map label for this gene is ybgC [C]

Identifier: 86750950

GI number: 86750950

Start: 4389061

End: 4389534

Strand: Direct

Name: ybgC [C]

Synonym: RPB_3842

Alternate gene names: 86750950

Gene position: 4389061-4389534 (Clockwise)

Preceding gene: 86750948

Following gene: 86750953

Centisome position: 82.32

GC content: 65.4

Gene sequence:

>474_bases
TTGTCTGCACGATCCCGCGACCACGCTGTGCCTCTGCTGGAGGACTTCCCCTACCGACTTTCGGACAATGTCCGGTTCGC
CGACCTCGATCCGAACAACCACGTCAACAACGCGGTCTATGCCAGCTATTTCGAGACCGGCCGGGTCACGCTGATGAAGC
AGCCGTCGCACGGGCTGATCCCGGAGGGGCTGTCCTGGGTGCTGGTGCGGCTCGATATCCACTTCCGCAGCGAGTTGCAC
TGGCCGGGAACCATCGAGCTCGGCATCGGCCTGGTCAAGCTCGGCCGGACCTCGACGCATTTCGATCAGGTGGTGTTTTC
AGAGGGCGTCTGCGTCGCCTCGGCACGCGCCGTGACCGTGCTGGTCGACGCAACCAGCCGCAAGCCGACGCCGTTGCCCG
ATCAATTGATCGCCAACCTGGCGCCGTGGTGGCTGCGCGGCGTCGATCACGCAGAGCGGACGCCGCGGGCGTGA

Upstream 100 bases:

>100_bases
GCCAAGCCCGGCGGGGGAGAAAAGCCATAAATGGCTTGCGGCACCTTGTTCTAGCTCAAGAACTGCGCTCAATGGTTTCC
AGAAGCCCGGAGAATGGCCC

Downstream 100 bases:

>100_bases
TTACGCCTGACGATCCGGGGTCGAGATCACCAGGCCGTCGAGTTCGTCCGAGACCTTGATCTGGCACGACAGCCGCGAGT
TCGGGCGCACGTCGTAGCCG

Product: thioesterase superfamily protein

Products: NA

Alternate protein names: Thioesterase; Thioesterase Family Protein; Thioesterase Superfamily

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSARSRDHAVPLLEDFPYRLSDNVRFADLDPNNHVNNAVYASYFETGRVTLMKQPSHGLIPEGLSWVLVRLDIHFRSELH
WPGTIELGIGLVKLGRTSTHFDQVVFSEGVCVASARAVTVLVDATSRKPTPLPDQLIANLAPWWLRGVDHAERTPRA

Sequences:

>Translated_157_residues
MSARSRDHAVPLLEDFPYRLSDNVRFADLDPNNHVNNAVYASYFETGRVTLMKQPSHGLIPEGLSWVLVRLDIHFRSELH
WPGTIELGIGLVKLGRTSTHFDQVVFSEGVCVASARAVTVLVDATSRKPTPLPDQLIANLAPWWLRGVDHAERTPRA
>Mature_156_residues
SARSRDHAVPLLEDFPYRLSDNVRFADLDPNNHVNNAVYASYFETGRVTLMKQPSHGLIPEGLSWVLVRLDIHFRSELHW
PGTIELGIGLVKLGRTSTHFDQVVFSEGVCVASARAVTVLVDATSRKPTPLPDQLIANLAPWWLRGVDHAERTPRA

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17562; Mature: 17431

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARSRDHAVPLLEDFPYRLSDNVRFADLDPNNHVNNAVYASYFETGRVTLMKQPSHGLI
CCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCC
PEGLSWVLVRLDIHFRSELHWPGTIELGIGLVKLGRTSTHFDQVVFSEGVCVASARAVTV
CCCCEEEEEEEEEEECCCCCCCCEEEECCEEEEECCCCCHHHHHHHHCCEEEECCCEEEE
LVDATSRKPTPLPDQLIANLAPWWLRGVDHAERTPRA
EEECCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SARSRDHAVPLLEDFPYRLSDNVRFADLDPNNHVNNAVYASYFETGRVTLMKQPSHGLI
CCCCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCC
PEGLSWVLVRLDIHFRSELHWPGTIELGIGLVKLGRTSTHFDQVVFSEGVCVASARAVTV
CCCCEEEEEEEEEEECCCCCCCCEEEECCEEEEECCCCCHHHHHHHHCCEEEECCCEEEE
LVDATSRKPTPLPDQLIANLAPWWLRGVDHAERTPRA
EEECCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA