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The map label for this gene is yibD [C]

Identifier: 86750948

GI number: 86750948

Start: 4386405

End: 4387448

Strand: Direct

Name: yibD [C]

Synonym: RPB_3840

Alternate gene names: 86750948

Gene position: 4386405-4387448 (Clockwise)

Preceding gene: 86750944

Following gene: 86750950

Centisome position: 82.27

GC content: 70.59

Gene sequence:

>1044_bases
GTGTCGCCGCATCGGCCGCCACAAGTCTCGGTGATCCTGCCGGTTCGCGACGGCCAGCGCTGGCTGCGCGAGGCGGTCGA
CAGCGTGCTGGCGCAGACCTTGTCCGATCTCGAACTCCTGGTGATCGACGACGGCTCGACCGACGCGACGCCGGCGATCC
TCGATGAAGCGCGCGCCCGCGATCCGCGTGTCGTCGTGCTGCGGCAGAGCCGCGAGGGGCTGGTCGCGGCGCTCAATCTG
GGCCTGGCGCGGGCCCGCGCGCCGCTGATCGCGCGACTCGACGCCGACGACATCGCGCTGCCGGAGCGGCTCGCGCGGCA
GCGCGACTATCTGCAGGCGCACCCGGACGTCGTGCTGCTCGGCGGCTGGGCCGAGATCATCGACGCCCAGGGCGCATCGT
CCGGCCGCCAGATGCGGCCGAGCCCGGACGGCCTGCGCGAGACGCTGACCAAGAAGAGCCCGTTCATCCATCCGACGGTG
ATGTTCCGCACAGACGCCGCGCGGCGCATCGGCGGCTATCGCGCCGCCTTCGAGGCCGGCGAGGATTATGATTTCTGGCT
GCGCCTCGCCGATATCGGCGCCATCGCCATCCTGCCCGAGGTGCTGATCCGCTATCGCGAGCACGGCGGCAGCGTTACAC
GCACCCGCGAGTTGCGGCAGATCTATTCCGCCCGCCTCGCCAAGCTCGCCAGCGCCGCCCGCAGCCACGGCGGCCCCGAT
CCCTCGGCGATCTTGACCGCGCCGCCCGACTGGCACGATGACGATCCCGGCAATTTCGAGCGCGACAGCTCGCGGCTGTT
CCGGATGCTAGAACTCGCCGACCCCTCGCTGGCGCGCACGGCGCCAGCGTCCGCGATCGACCTCGCTGCGATCACCTCGC
AGCGATCCACGCTGACCGCCGGCGAACGGAAGTTCGCGCAAGCCGCATTGCTGAACCTGCTGCGCGAGCGCCGCGACCTC
CCGGTCTCCCGCGCCAGGCTGATCGCCCTGCTGCTATGGCTGGGACCGGCGAAGGCGATGAAGAAGCTGATACGGACGAA
GTAA

Upstream 100 bases:

>100_bases
ACCGCCGATATTCGCGCCACCGCGCGCCGCTTGCAAAGCGGCGGCCGGCGCGGTCTATCTCGGGGTCCGTGCCGCGTGCA
CAAATCGAGTGAGGACGACA

Downstream 100 bases:

>100_bases
CAGCGAGCGACCGAGGAGACGCGTCGTCCGGCTGAGCGCAGCGACACCCGGAGCCGCCGCCCTTCGATGCCTCGAAGTCA
CAAGTCACGAAACGCCCCCG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSPHRPPQVSVILPVRDGQRWLREAVDSVLAQTLSDLELLVIDDGSTDATPAILDEARARDPRVVVLRQSREGLVAALNL
GLARARAPLIARLDADDIALPERLARQRDYLQAHPDVVLLGGWAEIIDAQGASSGRQMRPSPDGLRETLTKKSPFIHPTV
MFRTDAARRIGGYRAAFEAGEDYDFWLRLADIGAIAILPEVLIRYREHGGSVTRTRELRQIYSARLAKLASAARSHGGPD
PSAILTAPPDWHDDDPGNFERDSSRLFRMLELADPSLARTAPASAIDLAAITSQRSTLTAGERKFAQAALLNLLRERRDL
PVSRARLIALLLWLGPAKAMKKLIRTK

Sequences:

>Translated_347_residues
MSPHRPPQVSVILPVRDGQRWLREAVDSVLAQTLSDLELLVIDDGSTDATPAILDEARARDPRVVVLRQSREGLVAALNL
GLARARAPLIARLDADDIALPERLARQRDYLQAHPDVVLLGGWAEIIDAQGASSGRQMRPSPDGLRETLTKKSPFIHPTV
MFRTDAARRIGGYRAAFEAGEDYDFWLRLADIGAIAILPEVLIRYREHGGSVTRTRELRQIYSARLAKLASAARSHGGPD
PSAILTAPPDWHDDDPGNFERDSSRLFRMLELADPSLARTAPASAIDLAAITSQRSTLTAGERKFAQAALLNLLRERRDL
PVSRARLIALLLWLGPAKAMKKLIRTK
>Mature_346_residues
SPHRPPQVSVILPVRDGQRWLREAVDSVLAQTLSDLELLVIDDGSTDATPAILDEARARDPRVVVLRQSREGLVAALNLG
LARARAPLIARLDADDIALPERLARQRDYLQAHPDVVLLGGWAEIIDAQGASSGRQMRPSPDGLRETLTKKSPFIHPTVM
FRTDAARRIGGYRAAFEAGEDYDFWLRLADIGAIAILPEVLIRYREHGGSVTRTRELRQIYSARLAKLASAARSHGGPDP
SAILTAPPDWHDDDPGNFERDSSRLFRMLELADPSLARTAPASAIDLAAITSQRSTLTAGERKFAQAALLNLLRERRDLP
VSRARLIALLLWLGPAKAMKKLIRTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI212640903, Length=242, Percent_Identity=26.0330578512397, Blast_Score=71, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38244; Mature: 38113

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPHRPPQVSVILPVRDGQRWLREAVDSVLAQTLSDLELLVIDDGSTDATPAILDEARAR
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCC
DPRVVVLRQSREGLVAALNLGLARARAPLIARLDADDIALPERLARQRDYLQAHPDVVLL
CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
GGWAEIIDAQGASSGRQMRPSPDGLRETLTKKSPFIHPTVMFRTDAARRIGGYRAAFEAG
CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECHHHHHHCCHHHHHHCC
EDYDFWLRLADIGAIAILPEVLIRYREHGGSVTRTRELRQIYSARLAKLASAARSHGGPD
CCHHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSAILTAPPDWHDDDPGNFERDSSRLFRMLELADPSLARTAPASAIDLAAITSQRSTLTA
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCHHHHH
GERKFAQAALLNLLRERRDLPVSRARLIALLLWLGPAKAMKKLIRTK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
SPHRPPQVSVILPVRDGQRWLREAVDSVLAQTLSDLELLVIDDGSTDATPAILDEARAR
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCC
DPRVVVLRQSREGLVAALNLGLARARAPLIARLDADDIALPERLARQRDYLQAHPDVVLL
CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
GGWAEIIDAQGASSGRQMRPSPDGLRETLTKKSPFIHPTVMFRTDAARRIGGYRAAFEAG
CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECHHHHHHCCHHHHHHCC
EDYDFWLRLADIGAIAILPEVLIRYREHGGSVTRTRELRQIYSARLAKLASAARSHGGPD
CCHHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PSAILTAPPDWHDDDPGNFERDSSRLFRMLELADPSLARTAPASAIDLAAITSQRSTLTA
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCHHHHH
GERKFAQAALLNLLRERRDLPVSRARLIALLLWLGPAKAMKKLIRTK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]