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The map label for this gene is yeiE [H]

Identifier: 86750705

GI number: 86750705

Start: 4122790

End: 4123671

Strand: Direct

Name: yeiE [H]

Synonym: RPB_3595

Alternate gene names: 86750705

Gene position: 4122790-4123671 (Clockwise)

Preceding gene: 86750704

Following gene: 86750706

Centisome position: 77.33

GC content: 65.53

Gene sequence:

>882_bases
ATGACCCTGGAACAGCTCCGCATCTTCATCGCGGTCGCCGAACAGCAACACATGACCCGCGCCGCGAGCGGACTGAACCT
CACCCAATCGGCCACCAGCGCGGCGATCGCCGCGCTGGAATCGCGCTACGACGTCCGACTGTTCGATCGTGTCGGCCGCG
GCATCGTGCTGACTCAGGCCGGCCGCGACTTCCTTGAAGAAGCCCGCGCTGTGGTCGCTCGCGCCAGGGCGGCTGCGCAG
GCGCTGGACGACATCGCCGGCCTGAAGCGAGGCGCGCTCAGCATCGCAGCCAGTCAGACGGTCGGCAACTACTGGCTGCC
GCCGCGGCTGCTCGCGTTCCAGCGCAACTATCCGGGGATCGCGCTGCAGGTGACGATTGCCAATACCGAGCAGGTCGCGC
GCGCGGTGCGCGACGGGCACGCCGATCTCGGTTTGGTCGAAGGCGAGATCGACGATCCGCTGCTCACCAACGACCGCATC
GACGGCGACAGTCTCGCGATCGTGGTCGGCAAACGGCATCCGTGGATCGGCACGACGCAAATTGCGGAAAACAAATTGAC
AACTACCGGTTGGATCCTGCGCGAGCGCGGATCCGGCACGCGGTCGATGTTCGAGGCGGCGTTGCGCGATATCGGCGTCG
ATCCGTCCAGCCTCGACGTCAAACTCGAGCTTCCGTCCAACGAGGCGATCCGGGCCGCGGTCGAAAGCTCGGACTACGCG
ACCGCGATCTCCGATCTGGTGGTTGCGCCGTCACTCGCGGCGGGGACCCTGCACCGTGTTCGTTTCGAATTGCCGCGTCG
TTCGTTCTGTGTGCTTCGTCACAGAGAACACAGCGGCGGACAGGCCGAAAAGGCCATGCTCGCGGCATTGTACGCTGAGT
GA

Upstream 100 bases:

>100_bases
TCGCCGCGCGCGGCCTGCGTCCGGCCTTGCTCGGCCTGTGCGCGGCCTTGTTCATCTCGGGCTTCTCGCTGAGCCTGATC
AAACTCACAGGATGGCATGG

Downstream 100 bases:

>100_bases
ACTAACACCGGAAAACGTTCTGCGTGCGAGTGATGAATTCCATATTTGTTGATTTGAAACTCGTCACAATCACCTCTACA
CAGGCATATCTTCGCGTACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTLEQLRIFIAVAEQQHMTRAASGLNLTQSATSAAIAALESRYDVRLFDRVGRGIVLTQAGRDFLEEARAVVARARAAAQ
ALDDIAGLKRGALSIAASQTVGNYWLPPRLLAFQRNYPGIALQVTIANTEQVARAVRDGHADLGLVEGEIDDPLLTNDRI
DGDSLAIVVGKRHPWIGTTQIAENKLTTTGWILRERGSGTRSMFEAALRDIGVDPSSLDVKLELPSNEAIRAAVESSDYA
TAISDLVVAPSLAAGTLHRVRFELPRRSFCVLRHREHSGGQAEKAMLAALYAE

Sequences:

>Translated_293_residues
MTLEQLRIFIAVAEQQHMTRAASGLNLTQSATSAAIAALESRYDVRLFDRVGRGIVLTQAGRDFLEEARAVVARARAAAQ
ALDDIAGLKRGALSIAASQTVGNYWLPPRLLAFQRNYPGIALQVTIANTEQVARAVRDGHADLGLVEGEIDDPLLTNDRI
DGDSLAIVVGKRHPWIGTTQIAENKLTTTGWILRERGSGTRSMFEAALRDIGVDPSSLDVKLELPSNEAIRAAVESSDYA
TAISDLVVAPSLAAGTLHRVRFELPRRSFCVLRHREHSGGQAEKAMLAALYAE
>Mature_292_residues
TLEQLRIFIAVAEQQHMTRAASGLNLTQSATSAAIAALESRYDVRLFDRVGRGIVLTQAGRDFLEEARAVVARARAAAQA
LDDIAGLKRGALSIAASQTVGNYWLPPRLLAFQRNYPGIALQVTIANTEQVARAVRDGHADLGLVEGEIDDPLLTNDRID
GDSLAIVVGKRHPWIGTTQIAENKLTTTGWILRERGSGTRSMFEAALRDIGVDPSSLDVKLELPSNEAIRAAVESSDYAT
AISDLVVAPSLAAGTLHRVRFELPRRSFCVLRHREHSGGQAEKAMLAALYAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=32.1799307958478, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI157672245, Length=215, Percent_Identity=32.5581395348837, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI145693105, Length=222, Percent_Identity=26.5765765765766, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788748, Length=214, Percent_Identity=26.1682242990654, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790399, Length=257, Percent_Identity=25.2918287937743, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787879, Length=202, Percent_Identity=29.7029702970297, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082132, Length=267, Percent_Identity=27.3408239700375, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787530, Length=224, Percent_Identity=27.6785714285714, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=30.8988764044944, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=196, Percent_Identity=25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789173, Length=129, Percent_Identity=31.7829457364341, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787128, Length=125, Percent_Identity=32, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=128, Percent_Identity=30.46875, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788296, Length=158, Percent_Identity=27.8481012658228, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=118, Percent_Identity=33.0508474576271, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787589, Length=118, Percent_Identity=31.3559322033898, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=28.2758620689655, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31702; Mature: 31571

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQLRIFIAVAEQQHMTRAASGLNLTQSATSAAIAALESRYDVRLFDRVGRGIVLTQA
CCHHHEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECC
GRDFLEEARAVVARARAAAQALDDIAGLKRGALSIAASQTVGNYWLPPRLLAFQRNYPGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCHHHHEEECCCCCE
ALQVTIANTEQVARAVRDGHADLGLVEGEIDDPLLTNDRIDGDSLAIVVGKRHPWIGTTQ
EEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHH
IAENKLTTTGWILRERGSGTRSMFEAALRDIGVDPSSLDVKLELPSNEAIRAAVESSDYA
HHCCCCCCHHEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCHHH
TAISDLVVAPSLAAGTLHRVRFELPRRSFCVLRHREHSGGQAEKAMLAALYAE
HHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TLEQLRIFIAVAEQQHMTRAASGLNLTQSATSAAIAALESRYDVRLFDRVGRGIVLTQA
CHHHEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECC
GRDFLEEARAVVARARAAAQALDDIAGLKRGALSIAASQTVGNYWLPPRLLAFQRNYPGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCHHHHEEECCCCCE
ALQVTIANTEQVARAVRDGHADLGLVEGEIDDPLLTNDRIDGDSLAIVVGKRHPWIGTTQ
EEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHH
IAENKLTTTGWILRERGSGTRSMFEAALRDIGVDPSSLDVKLELPSNEAIRAAVESSDYA
HHCCCCCCHHEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCHHH
TAISDLVVAPSLAAGTLHRVRFELPRRSFCVLRHREHSGGQAEKAMLAALYAE
HHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]