Click here to switch to the map view.

The map label for this gene is oprF [H]

Identifier: 86750700

GI number: 86750700

Start: 4114920

End: 4116275

Strand: Reverse

Name: oprF [H]

Synonym: RPB_3590

Alternate gene names: 86750700

Gene position: 4116275-4114920 (Counterclockwise)

Preceding gene: 86750701

Following gene: 86750696

Centisome position: 77.2

GC content: 70.87

Gene sequence:

>1356_bases
ATGTTGTATCTCCTGACTCATTACTGGATCTGGCTGGCCGTCGCGTTCGCGGTCGGGGTCGTCACGCCGCTGCTGGCGCA
GAAACTCGGCTGGGCCGCGGACCTCGAAAACTACTGGCTGCAGCGCATCGGTGTGGTGCTGGCGATCGTCGTGGTGGTGA
TCGTGATGCAGCTCGTCTCGGGCCGGCCGGAGCTGATGCTGGAGGCGGCCGCCGGGCTGGTCGCCGCTTACATCGTCGGC
GGCATTGCTGGTGGTATCGCGCCGGGGCTGCTGCCGGCGCGGTTCGAGGGCTGGTGGGTCGGGCTGTTCGCCACCGGGCT
GATCTGGCTGGTGTTCAGCATCACCACGATGCCGAAGGTCGAGCCGGACCTGCGCGAGCGCGTCGCCGAGGTGGTGAAGA
GCGCCGGCGCCGATCCGTTGAATTTCGATGTGTCGGGCCGCGACGTGCTGCTGCCGGACGATCTCGGCGCGAAGCGCGCG
GTGCTGAGCGAGCAGATCGGGCAGGTCAAGGGCGTGCGGCTGGTATCGGAGGTCGAGGAGCTGAGCGGCGCGGCGCTGGC
GGCGAAGACGGTCGCCAGGCTGCAGGCGGAAGTTGCCGCGAAGGCCGAGGCCGACGCCAAGGCCAAGGCCGAAGCCGAGG
CGCGCGAGGCGGTCGAGAAGGCAGCGGTCGCCAAGGCCGCCAAGGACACTGCGGCGAAGCAGGCGGCGGCCAAGGCCAAG
GCCGACGCCGAGGCGAAGGAAGCCGCGGCGAAGGAAGCCGCGGCGAAGGAAGCCGCCGAGATCGCGGCAAAGGAAGCGGC
CGCCAAGGAGGCGGCGGCGAAGGAAGCTGCGGCCAAGGAGGCAGCCGCCAAGGAGGCCGCGGCCAAGGAAGCGGCTGCGA
AGTCGGCCGCCGCGGAAGAGGCCAAGCCGGCCGCCGTCGCGCCGCCGGCCGCGCCCGCCGCCGCCGCGGCGACCCGCACC
GCCGATGCCGCCGGCACCGCGTCGATCCCGTCGGTGGAGGCCTGCCAGAGCAAGCTGTCGACATTGGTCGCCGCGCAGAA
GATCAATTTCATGCGCGGCAGCGCCGAGATCGCGCAGGCCTCATTGCCGGTGCTGAAGCAACTCGCGGAGGTGATCGCGC
ATTGCCCGGCGGCGACCATCGAGGTCGCCGGCCACACCGATGCCGCCGGCAAGAAGGCCGCCAACGAGGCGCTGTCGAAG
CGCCGCGCCGAGGCGGTCGCCGACAACCTCACCAAGGCCGGGATCGGCTCGGCCAAGCTCACCGCCGTCGGCTACGGCGC
GTCGAAGCCGCTCGCGGCCAACGACAGTGCGGACGGTCGTGCGAAGAATCGGCGGATCGAGTTCGTGGTGAAGTGA

Upstream 100 bases:

>100_bases
ACATTCAAGCGCGCGCGCTCGCCCTGCATCTGCGGAGCGACCCCGACGATCAGCGGGGCACCGAGGTGGCGTCGATCGCG
GCGGAGAAGGATGCGCCTCG

Downstream 100 bases:

>100_bases
CTAAGCGGTGCTCTCTTCACCCTCCCCTGAAGGGGGAGGGTCGGCTCGCAACTCGCGAAGCGAGATGCGGGACGGGGTGG
GGTGAGCCGCGGGCACGGTG

Product: OmpA/MotB

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MLYLLTHYWIWLAVAFAVGVVTPLLAQKLGWAADLENYWLQRIGVVLAIVVVVIVMQLVSGRPELMLEAAAGLVAAYIVG
GIAGGIAPGLLPARFEGWWVGLFATGLIWLVFSITTMPKVEPDLRERVAEVVKSAGADPLNFDVSGRDVLLPDDLGAKRA
VLSEQIGQVKGVRLVSEVEELSGAALAAKTVARLQAEVAAKAEADAKAKAEAEAREAVEKAAVAKAAKDTAAKQAAAKAK
ADAEAKEAAAKEAAAKEAAEIAAKEAAAKEAAAKEAAAKEAAAKEAAAKEAAAKSAAAEEAKPAAVAPPAAPAAAAATRT
ADAAGTASIPSVEACQSKLSTLVAAQKINFMRGSAEIAQASLPVLKQLAEVIAHCPAATIEVAGHTDAAGKKAANEALSK
RRAEAVADNLTKAGIGSAKLTAVGYGASKPLAANDSADGRAKNRRIEFVVK

Sequences:

>Translated_451_residues
MLYLLTHYWIWLAVAFAVGVVTPLLAQKLGWAADLENYWLQRIGVVLAIVVVVIVMQLVSGRPELMLEAAAGLVAAYIVG
GIAGGIAPGLLPARFEGWWVGLFATGLIWLVFSITTMPKVEPDLRERVAEVVKSAGADPLNFDVSGRDVLLPDDLGAKRA
VLSEQIGQVKGVRLVSEVEELSGAALAAKTVARLQAEVAAKAEADAKAKAEAEAREAVEKAAVAKAAKDTAAKQAAAKAK
ADAEAKEAAAKEAAAKEAAEIAAKEAAAKEAAAKEAAAKEAAAKEAAAKEAAAKSAAAEEAKPAAVAPPAAPAAAAATRT
ADAAGTASIPSVEACQSKLSTLVAAQKINFMRGSAEIAQASLPVLKQLAEVIAHCPAATIEVAGHTDAAGKKAANEALSK
RRAEAVADNLTKAGIGSAKLTAVGYGASKPLAANDSADGRAKNRRIEFVVK
>Mature_451_residues
MLYLLTHYWIWLAVAFAVGVVTPLLAQKLGWAADLENYWLQRIGVVLAIVVVVIVMQLVSGRPELMLEAAAGLVAAYIVG
GIAGGIAPGLLPARFEGWWVGLFATGLIWLVFSITTMPKVEPDLRERVAEVVKSAGADPLNFDVSGRDVLLPDDLGAKRA
VLSEQIGQVKGVRLVSEVEELSGAALAAKTVARLQAEVAAKAEADAKAKAEAEAREAVEKAAVAKAAKDTAAKQAAAKAK
ADAEAKEAAAKEAAAKEAAEIAAKEAAAKEAAAKEAAAKEAAAKEAAAKEAAAKSAAAEEAKPAAVAPPAAPAAAAATRT
ADAAGTASIPSVEACQSKLSTLVAAQKINFMRGSAEIAQASLPVLKQLAEVIAHCPAATIEVAGHTDAAGKKAANEALSK
RRAEAVADNLTKAGIGSAKLTAVGYGASKPLAANDSADGRAKNRRIEFVVK

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=32.3809523809524, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 46001; Mature: 46001

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYLLTHYWIWLAVAFAVGVVTPLLAQKLGWAADLENYWLQRIGVVLAIVVVVIVMQLVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRPELMLEAAAGLVAAYIVGGIAGGIAPGLLPARFEGWWVGLFATGLIWLVFSITTMPKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
EPDLRERVAEVVKSAGADPLNFDVSGRDVLLPDDLGAKRAVLSEQIGQVKGVRLVSEVEE
CHHHHHHHHHHHHHCCCCCCEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LSGAALAAKTVARLQAEVAAKAEADAKAKAEAEAREAVEKAAVAKAAKDTAAKQAAAKAK
HCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADAEAKEAAAKEAAAKEAAEIAAKEAAAKEAAAKEAAAKEAAAKEAAAKEAAAKSAAAEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKPAAVAPPAAPAAAAATRTADAAGTASIPSVEACQSKLSTLVAAQKINFMRGSAEIAQA
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SLPVLKQLAEVIAHCPAATIEVAGHTDAAGKKAANEALSKRRAEAVADNLTKAGIGSAKL
HHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TAVGYGASKPLAANDSADGRAKNRRIEFVVK
EEEECCCCCCCCCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MLYLLTHYWIWLAVAFAVGVVTPLLAQKLGWAADLENYWLQRIGVVLAIVVVVIVMQLVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRPELMLEAAAGLVAAYIVGGIAGGIAPGLLPARFEGWWVGLFATGLIWLVFSITTMPKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
EPDLRERVAEVVKSAGADPLNFDVSGRDVLLPDDLGAKRAVLSEQIGQVKGVRLVSEVEE
CHHHHHHHHHHHHHCCCCCCEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LSGAALAAKTVARLQAEVAAKAEADAKAKAEAEAREAVEKAAVAKAAKDTAAKQAAAKAK
HCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADAEAKEAAAKEAAAKEAAEIAAKEAAAKEAAAKEAAAKEAAAKEAAAKEAAAKSAAAEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKPAAVAPPAAPAAAAATRTADAAGTASIPSVEACQSKLSTLVAAQKINFMRGSAEIAQA
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SLPVLKQLAEVIAHCPAATIEVAGHTDAAGKKAANEALSKRRAEAVADNLTKAGIGSAKL
HHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
TAVGYGASKPLAANDSADGRAKNRRIEFVVK
EEEECCCCCCCCCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]