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The map label for this gene is cycK [H]

Identifier: 86750559

GI number: 86750559

Start: 3953431

End: 3955413

Strand: Reverse

Name: cycK [H]

Synonym: RPB_3448

Alternate gene names: 86750559

Gene position: 3955413-3953431 (Counterclockwise)

Preceding gene: 86750560

Following gene: 86750558

Centisome position: 74.19

GC content: 67.98

Gene sequence:

>1983_bases
ATGATCGCCGAGGCCGGCCACTACGCGCTGGTGCTGGCGCTGGCGCTGGCGCTGATCCAGTCGACGGTGCCGATCCTCGG
CGCGCGGCTGGGCGACGGCGGGCTGATGAACGTCGCGCGCTCGGCGGCGCTGGCGCAATTCGTCTTCGTCGCCGTCTCGT
TCGGCGCGCTGGTCTGGCTCAACGTCACCTCCGACTTCTCGGTCGTCAACGTCTACGAGAATTCGCATTCGGCCAAGCCG
CTGCTCTACAAGATCACCGGCGTGTGGGGGAACCACGAAGGTTCGATGCTGCTGTGGGTGGCGATCCTGGCGCTGTTCGG
CGGCATGGTCGCAGCGTTCGGCAACAACCTGCCGCTGTCGCTGCGCGCCCACGTGCTAGCGGTGCAGGCCTGGGTGGCGA
GCGCGTTCTATCTGTTCATCCTGATCACCTCGAACCCGTTCCTGCGGATTCCCAATCCGCCGCTCGAGGGTCGCGACCTC
AATCCGGTACTGCAGGACATCGGCCTCGCGGTGCATCCGCCGCTGCTGTATCTCGGCTATGTCGGCTTCTCGATCTCGTT
CTCCTTCGCCGCCGCGGCGCTGATCGAGGGGCGGCTCGACGCGGCCTGGGCGCGCTGGGTGCGGCCGTGGACGCTGATGG
CGTGGATCTTCCTGACGCTGGGCATCGCGATGGGCTCGTACTGGGCCTATTACGAACTCGGCTGGGGCGGCTGGTGGTTC
TGGGACCCGGTCGAGAACGCCTCGCTGATGCCGTGGCTCGCCGGCACCGCGCTGCTGCATTCGGCGCTGGTGATGGAGAA
GCGCAACGCGCTGAAGGTCTGGACCATCCTGCTGTCGATCCTGACCTTCTCGCTGTCGCTGCTCGGCACCTTCCTGGTGC
GCTCAGGCGTCTTGACCTCGGTGCACACCTTCGCCACCGATCCGTCGCGCGGCGTGTTCATCCTGATGATCCTGTGCATC
TTCATCGGCGGCAGCCTGGCGCTGTTTGCCTGGCGCGCCTCGGCGCTGAAGCAGGGCGGGCTGTTCGCGCCGATCTCGCG
CGAGGGCGCGCTGGTGCTGAACAATCTGTTTCTCACCACCGCCTGCGCCACGGTGTTCGTCGGCACGCTGTATCCGCTGG
CGCTGGAAGTTCTCACCGGCGACAAGATCTCGGTCGGCGCGCCGTTCTTCAATCTCACCTTCGGTCCGCTGATGGTGCCG
CTGATGCTGGCGATGCCGTTCGGCCCGCTGCTGGCGTGGAAGCGCGGCGATCTGCTCGGTGCCGCCCAGCGGCTGATCGC
CGCCGGCGTCGTCGCGCTGCTCGCGGTCGCCCTGGTCTGGGCCTGGACGTTCGGCGGCCCGGTGCTGGCGCCGCTGGCGA
TCGGGCTCGCGGTGTTCGTGATTGCCGGCGCGCTCGCCGACATCGTCGAGCGCATCGGCCTGCTGCGCAATCCGTTGTCG
ATTGCGGCGCGCCGCGCCCGAGGGCTGCCGCGCTCGGCGTGGGGCACGCTGTTCGCTCATGCCGGCATCGGCGTGGCGCT
GATCGGCATCGTCTGCGAGACCACCTGGAACAGCGAGCACATCGCCGCGATGAAGGAGGGCGAGTCCGCCAAGCTCGCCG
GCTACGAACTCAAATTCGACGGCGCGATTCAGCGCCAGGGCCCGAACTATCGCGAGTTGCAGACGCATTTCTCGGTCAGC
GAGAACGGCCGGCCGATCGGCGCGATGACGCCGTCGAAGCGCAGCTTCACCACCCGCAACACGTCGACCACCGAGGCTGC
GCTGCTGACCCGCGGCGTCAGCCAGCTCTACATCTCGCTCGGCGACATCGACGCCGCCGGCGCGGTGACGGTGCGGATCT
ATCACAAGCCCTTGGTGCTGCTGATCTGGATCGGTCCGCTGCTGATGGCGTTCGGCGGCCTGTTGTCACTGTCGGATCGG
CGGCTGCGCGTCGGCGCGCCGAAGCCGGCCAAGCCGCAGCGCTTGCTGCAGCCGGCGGAGTAA

Upstream 100 bases:

>100_bases
CCGACGCGCTGAAGAAGCAGGGCCACTGGAAGGACGATTACGAGAAGAAGCCGCCCGGGCCCGGTGCGGCGGCCTCCGCC
GACGCCATGAGGCCGGCGCG

Downstream 100 bases:

>100_bases
CAAAGGCCTCATCCTGAGGAGCCCGGCGCAGCTCGTCAGAGCGAAGACGGGCGTCTCGAAGGATGTGCCACAACAACTGA
TCCTTCGAGACGCATCCTGC

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MIAEAGHYALVLALALALIQSTVPILGARLGDGGLMNVARSAALAQFVFVAVSFGALVWLNVTSDFSVVNVYENSHSAKP
LLYKITGVWGNHEGSMLLWVAILALFGGMVAAFGNNLPLSLRAHVLAVQAWVASAFYLFILITSNPFLRIPNPPLEGRDL
NPVLQDIGLAVHPPLLYLGYVGFSISFSFAAAALIEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLSILTFSLSLLGTFLVRSGVLTSVHTFATDPSRGVFILMILCI
FIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLTTACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVP
LMLAMPFGPLLAWKRGDLLGAAQRLIAAGVVALLAVALVWAWTFGGPVLAPLAIGLAVFVIAGALADIVERIGLLRNPLS
IAARRARGLPRSAWGTLFAHAGIGVALIGIVCETTWNSEHIAAMKEGESAKLAGYELKFDGAIQRQGPNYRELQTHFSVS
ENGRPIGAMTPSKRSFTTRNTSTTEAALLTRGVSQLYISLGDIDAAGAVTVRIYHKPLVLLIWIGPLLMAFGGLLSLSDR
RLRVGAPKPAKPQRLLQPAE

Sequences:

>Translated_660_residues
MIAEAGHYALVLALALALIQSTVPILGARLGDGGLMNVARSAALAQFVFVAVSFGALVWLNVTSDFSVVNVYENSHSAKP
LLYKITGVWGNHEGSMLLWVAILALFGGMVAAFGNNLPLSLRAHVLAVQAWVASAFYLFILITSNPFLRIPNPPLEGRDL
NPVLQDIGLAVHPPLLYLGYVGFSISFSFAAAALIEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLSILTFSLSLLGTFLVRSGVLTSVHTFATDPSRGVFILMILCI
FIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLTTACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVP
LMLAMPFGPLLAWKRGDLLGAAQRLIAAGVVALLAVALVWAWTFGGPVLAPLAIGLAVFVIAGALADIVERIGLLRNPLS
IAARRARGLPRSAWGTLFAHAGIGVALIGIVCETTWNSEHIAAMKEGESAKLAGYELKFDGAIQRQGPNYRELQTHFSVS
ENGRPIGAMTPSKRSFTTRNTSTTEAALLTRGVSQLYISLGDIDAAGAVTVRIYHKPLVLLIWIGPLLMAFGGLLSLSDR
RLRVGAPKPAKPQRLLQPAE
>Mature_660_residues
MIAEAGHYALVLALALALIQSTVPILGARLGDGGLMNVARSAALAQFVFVAVSFGALVWLNVTSDFSVVNVYENSHSAKP
LLYKITGVWGNHEGSMLLWVAILALFGGMVAAFGNNLPLSLRAHVLAVQAWVASAFYLFILITSNPFLRIPNPPLEGRDL
NPVLQDIGLAVHPPLLYLGYVGFSISFSFAAAALIEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLSILTFSLSLLGTFLVRSGVLTSVHTFATDPSRGVFILMILCI
FIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLTTACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVP
LMLAMPFGPLLAWKRGDLLGAAQRLIAAGVVALLAVALVWAWTFGGPVLAPLAIGLAVFVIAGALADIVERIGLLRNPLS
IAARRARGLPRSAWGTLFAHAGIGVALIGIVCETTWNSEHIAAMKEGESAKLAGYELKFDGAIQRQGPNYRELQTHFSVS
ENGRPIGAMTPSKRSFTTRNTSTTEAALLTRGVSQLYISLGDIDAAGAVTVRIYHKPLVLLIWIGPLLMAFGGLLSLSDR
RLRVGAPKPAKPQRLLQPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=657, Percent_Identity=45.9665144596651, Blast_Score=503, Evalue=1e-143,
Organism=Escherichia coli, GI1790511, Length=356, Percent_Identity=46.0674157303371, Blast_Score=258, Evalue=6e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70947; Mature: 70947

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAEAGHYALVLALALALIQSTVPILGARLGDGGLMNVARSAALAQFVFVAVSFGALVWL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEE
NVTSDFSVVNVYENSHSAKPLLYKITGVWGNHEGSMLLWVAILALFGGMVAAFGNNLPLS
EECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRAHVLAVQAWVASAFYLFILITSNPFLRIPNPPLEGRDLNPVLQDIGLAVHPPLLYLGY
HHHHHHHHHHHHHHHHHEEEEEECCCEEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSISFSFAAAALIEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLSILTFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHTFATDPSRGVFILMILCIFIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLTT
HHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHH
ACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVPLMLAMPFGPLLAWKRGDLLG
HHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCHHHHHHHHHHHCCCCHHHHCCCCCHHH
AAQRLIAAGVVALLAVALVWAWTFGGPVLAPLAIGLAVFVIAGALADIVERIGLLRNPLS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
IAARRARGLPRSAWGTLFAHAGIGVALIGIVCETTWNSEHIAAMKEGESAKLAGYELKFD
HHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEEEEC
GAIQRQGPNYRELQTHFSVSENGRPIGAMTPSKRSFTTRNTSTTEAALLTRGVSQLYISL
CCCCCCCCCHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GDIDAAGAVTVRIYHKPLVLLIWIGPLLMAFGGLLSLSDRRLRVGAPKPAKPQRLLQPAE
CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCHHCCCCCEEEECCCCCCCHHHCCCCCC
>Mature Secondary Structure
MIAEAGHYALVLALALALIQSTVPILGARLGDGGLMNVARSAALAQFVFVAVSFGALVWL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEE
NVTSDFSVVNVYENSHSAKPLLYKITGVWGNHEGSMLLWVAILALFGGMVAAFGNNLPLS
EECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRAHVLAVQAWVASAFYLFILITSNPFLRIPNPPLEGRDLNPVLQDIGLAVHPPLLYLGY
HHHHHHHHHHHHHHHHHEEEEEECCCEEECCCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSISFSFAAAALIEGRLDAAWARWVRPWTLMAWIFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASLMPWLAGTALLHSALVMEKRNALKVWTILLSILTFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHTFATDPSRGVFILMILCIFIGGSLALFAWRASALKQGGLFAPISREGALVLNNLFLTT
HHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHH
ACATVFVGTLYPLALEVLTGDKISVGAPFFNLTFGPLMVPLMLAMPFGPLLAWKRGDLLG
HHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCHHHHHHHHHHHCCCCHHHHCCCCCHHH
AAQRLIAAGVVALLAVALVWAWTFGGPVLAPLAIGLAVFVIAGALADIVERIGLLRNPLS
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
IAARRARGLPRSAWGTLFAHAGIGVALIGIVCETTWNSEHIAAMKEGESAKLAGYELKFD
HHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEEEEC
GAIQRQGPNYRELQTHFSVSENGRPIGAMTPSKRSFTTRNTSTTEAALLTRGVSQLYISL
CCCCCCCCCHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GDIDAAGAVTVRIYHKPLVLLIWIGPLLMAFGGLLSLSDRRLRVGAPKPAKPQRLLQPAE
CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCHHCCCCCEEEECCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715601; 12597275 [H]