Click here to switch to the map view.

The map label for this gene is 86750374

Identifier: 86750374

GI number: 86750374

Start: 3733266

End: 3734090

Strand: Reverse

Name: 86750374

Synonym: RPB_3263

Alternate gene names: NA

Gene position: 3734090-3733266 (Counterclockwise)

Preceding gene: 86750375

Following gene: 86750373

Centisome position: 70.04

GC content: 68.0

Gene sequence:

>825_bases
ATGAGCGACGACGAATGTCCGGATGCCGGACGCCTGATGCTGATCAGCCCTGAACGCGTCTTTTACGCCGGCCTGCTGGG
CCGCCCGCGGCGGCGGAGCATCGGCGGCTTTTCCGTCTATGTTGCGCTGCAAGGTGAGTTGCGGGTCGCGATCGAGGGCC
GGCCTTTGCAGGCCGGCGCGATGGTCTATGTGCCGCCCTATCTCACGCACAACGTGGAAGGCGACTGTCGCTCGGTGATT
GTTCTGGTGATCGAGCCGGAGAGCGTCCTCGACGGGCCGATGGCGGCGCTCGGCACACGGATCGCAGGCGCTGGCGCCGG
GCCGCTCGCGGGCCGGATCAGGCGGGCCTATCAGACGCTGGTCGCAACAGGCCGGCGCGAGGGCTTCACCACTTCGGAAT
TCGACGATCTGTTCTTCGGCGAATCGCTGCCGGCGCGCAGGATCGACCGCCGCATCGCCGGCGCGATCGCGAGGCTGAAC
GACGTCTCCGGCGCGGCCGTCACCGCGGAGGATTGCGCCGCCACCGCGAACCTCTCGCAGTCGCGCTTCCTGCATCTGTT
CAAGGACGAGACCGGCGTCTCTTTCCGCGCGCTACGCGCCTGGAAGCGGGCGCGGCACCTGCTGCACTTCGTCAACGCCG
AGATCAACCTCGCGCATCTGGCGCAGGACATCGGCTATCCGGATTCGACCCACTTCAGCCATTCGATCCGGCGCTTCTAC
GGGCTGCAGCCGCGCGCGATCTTCTCCGGCTCGCGCGATCTGGCGATCTGGCGCAGCGATCCGCATGGCGCCGGCGTCGC
GGAATTTCGGCAGGGGCGGCCTTAG

Upstream 100 bases:

>100_bases
CCGGTGACAACATCGGGCTTTGCTGTATTGTCCGAGGCGCTCCGCAAGAGAGCCCTGCAGCAATGCGGCAGAAGGGCGGC
GCCCCGCCCCGGGAGGAACG

Downstream 100 bases:

>100_bases
CCGAAGGCGCCGATCCGACGACAGCGCGTGCACGCAAGAAGCGCCCGCGCGGCACACGCATCATTCCGTCCGACATGGTT
TGCGCATCACGAGTCTCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC/XylS Family Transcription Factor

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSDDECPDAGRLMLISPERVFYAGLLGRPRRRSIGGFSVYVALQGELRVAIEGRPLQAGAMVYVPPYLTHNVEGDCRSVI
VLVIEPESVLDGPMAALGTRIAGAGAGPLAGRIRRAYQTLVATGRREGFTTSEFDDLFFGESLPARRIDRRIAGAIARLN
DVSGAAVTAEDCAATANLSQSRFLHLFKDETGVSFRALRAWKRARHLLHFVNAEINLAHLAQDIGYPDSTHFSHSIRRFY
GLQPRAIFSGSRDLAIWRSDPHGAGVAEFRQGRP

Sequences:

>Translated_274_residues
MSDDECPDAGRLMLISPERVFYAGLLGRPRRRSIGGFSVYVALQGELRVAIEGRPLQAGAMVYVPPYLTHNVEGDCRSVI
VLVIEPESVLDGPMAALGTRIAGAGAGPLAGRIRRAYQTLVATGRREGFTTSEFDDLFFGESLPARRIDRRIAGAIARLN
DVSGAAVTAEDCAATANLSQSRFLHLFKDETGVSFRALRAWKRARHLLHFVNAEINLAHLAQDIGYPDSTHFSHSIRRFY
GLQPRAIFSGSRDLAIWRSDPHGAGVAEFRQGRP
>Mature_273_residues
SDDECPDAGRLMLISPERVFYAGLLGRPRRRSIGGFSVYVALQGELRVAIEGRPLQAGAMVYVPPYLTHNVEGDCRSVIV
LVIEPESVLDGPMAALGTRIAGAGAGPLAGRIRRAYQTLVATGRREGFTTSEFDDLFFGESLPARRIDRRIAGAIARLND
VSGAAVTAEDCAATANLSQSRFLHLFKDETGVSFRALRAWKRARHLLHFVNAEINLAHLAQDIGYPDSTHFSHSIRRFYG
LQPRAIFSGSRDLAIWRSDPHGAGVAEFRQGRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30001; Mature: 29869

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDECPDAGRLMLISPERVFYAGLLGRPRRRSIGGFSVYVALQGELRVAIEGRPLQAGA
CCCCCCCCCCCEEEECCCHHEEHHHCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCC
MVYVPPYLTHNVEGDCRSVIVLVIEPESVLDGPMAALGTRIAGAGAGPLAGRIRRAYQTL
EEEECCHHCCCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
VATGRREGFTTSEFDDLFFGESLPARRIDRRIAGAIARLNDVSGAAVTAEDCAATANLSQ
HHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCH
SRFLHLFKDETGVSFRALRAWKRARHLLHFVNAEINLAHLAQDIGYPDSTHFSHSIRRFY
HHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
GLQPRAIFSGSRDLAIWRSDPHGAGVAEFRQGRP
CCCCCEEECCCCCEEEEECCCCCCCHHHHCCCCC
>Mature Secondary Structure 
SDDECPDAGRLMLISPERVFYAGLLGRPRRRSIGGFSVYVALQGELRVAIEGRPLQAGA
CCCCCCCCCCEEEECCCHHEEHHHCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCC
MVYVPPYLTHNVEGDCRSVIVLVIEPESVLDGPMAALGTRIAGAGAGPLAGRIRRAYQTL
EEEECCHHCCCCCCCCEEEEEEEECCHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
VATGRREGFTTSEFDDLFFGESLPARRIDRRIAGAIARLNDVSGAAVTAEDCAATANLSQ
HHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCH
SRFLHLFKDETGVSFRALRAWKRARHLLHFVNAEINLAHLAQDIGYPDSTHFSHSIRRFY
HHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
GLQPRAIFSGSRDLAIWRSDPHGAGVAEFRQGRP
CCCCCEEECCCCCEEEEECCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA