Click here to switch to the map view.

The map label for this gene is 86750373

Identifier: 86750373

GI number: 86750373

Start: 3732268

End: 3733134

Strand: Reverse

Name: 86750373

Synonym: RPB_3262

Alternate gene names: NA

Gene position: 3733134-3732268 (Counterclockwise)

Preceding gene: 86750374

Following gene: 86750372

Centisome position: 70.02

GC content: 65.17

Gene sequence:

>867_bases
ATGAGCGACAAGGCCGTGATCACCTGCTCGCTGAACGGCGTGCTGACCGACCCGAAGCAGCACCACGTTCCGGTGACGCC
GGAGCAGATGGCCCGCGAAGCCAGGGCGGCTTACGACGCCGGCGCCGCGATCGTGCACATCCATCTGCGCGACCAGCGGC
CCGACAAGGGCCACCTGCCGAGTTGGGACGTGGCCGTCTCGCGCGAAATCCAGCAGGCGATCCGCGAAGCCTGTCCGGGC
GTCATCATCAACCACACCTCCGGCACCTCCGGGCCGCACTATGAAGGGCCGCTCGCCTGCATCCGTGAGACCAGGCCCGA
GATCGCCGCCTGCAACGCCGGCTCGCTGAACTATCTCAAGGTCAAGTCCGACAACAACTGGGCGTGGCCGCCGATGATGT
TCGACAATTCGGTCGAGAAGATTCAGGACTTTCTCGCCGCGATGAGGGACGCCGGCACGATCCCCGAATTCGAATGTTTC
GACGTCGGCATCGTGCGCTGCGTCGGCATGTATGTTCAGACCGGGATGTATGACGGCCCGCTCGAGTACAATTTCGTGAT
GGGCGTCGCCTCCGGCATGCCGGCCGATCCCGAATTGCTGCCGATCCTGCTGAAGCTGAAGCGCCCCGAGGCGCATTGGC
AGGTGACCGCGATCGGCCGCTCGGAGATCTGGCCGCTGCACCAGGCGTGCGCCGACCTCGGCGGACATCTACGCACCGGG
CTCGAAGACACGTTCTATCTCGCCAATGGCGAGAAGGTGACGTCGAACGGGCAATTGATCGAGGAAATCGCCGGCTGCGC
GCGGCGGGCAGGGCGCGAGATCGCGAGCCCGGCGGAGGCGCGCAAGATTTTCGGCGTGCTCAATTAG

Upstream 100 bases:

>100_bases
ACGCAAGAAGCGCCCGCGCGGCACACGCATCATTCCGTCCGACATGGTTTGCGCATCACGAGTCTCGCGAGCGCAGCATC
ACCGGAAGGGCTGACCTGGA

Downstream 100 bases:

>100_bases
TTGCGGTCATTCCGGGGCGCCGCGCAGCGGCGAGCCCGGAAACCCGAGATGTTCTGCTCGTATCAGGTTCCGGGTTCGCG
CTTCGCGCGCCCCGGAACGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSDKAVITCSLNGVLTDPKQHHVPVTPEQMAREARAAYDAGAAIVHIHLRDQRPDKGHLPSWDVAVSREIQQAIREACPG
VIINHTSGTSGPHYEGPLACIRETRPEIAACNAGSLNYLKVKSDNNWAWPPMMFDNSVEKIQDFLAAMRDAGTIPEFECF
DVGIVRCVGMYVQTGMYDGPLEYNFVMGVASGMPADPELLPILLKLKRPEAHWQVTAIGRSEIWPLHQACADLGGHLRTG
LEDTFYLANGEKVTSNGQLIEEIAGCARRAGREIASPAEARKIFGVLN

Sequences:

>Translated_288_residues
MSDKAVITCSLNGVLTDPKQHHVPVTPEQMAREARAAYDAGAAIVHIHLRDQRPDKGHLPSWDVAVSREIQQAIREACPG
VIINHTSGTSGPHYEGPLACIRETRPEIAACNAGSLNYLKVKSDNNWAWPPMMFDNSVEKIQDFLAAMRDAGTIPEFECF
DVGIVRCVGMYVQTGMYDGPLEYNFVMGVASGMPADPELLPILLKLKRPEAHWQVTAIGRSEIWPLHQACADLGGHLRTG
LEDTFYLANGEKVTSNGQLIEEIAGCARRAGREIASPAEARKIFGVLN
>Mature_287_residues
SDKAVITCSLNGVLTDPKQHHVPVTPEQMAREARAAYDAGAAIVHIHLRDQRPDKGHLPSWDVAVSREIQQAIREACPGV
IINHTSGTSGPHYEGPLACIRETRPEIAACNAGSLNYLKVKSDNNWAWPPMMFDNSVEKIQDFLAAMRDAGTIPEFECFD
VGIVRCVGMYVQTGMYDGPLEYNFVMGVASGMPADPELLPILLKLKRPEAHWQVTAIGRSEIWPLHQACADLGGHLRTGL
EDTFYLANGEKVTSNGQLIEEIAGCARRAGREIASPAEARKIFGVLN

Specific function: Unknown

COG id: COG3246

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31525; Mature: 31394

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKAVITCSLNGVLTDPKQHHVPVTPEQMAREARAAYDAGAAIVHIHLRDQRPDKGHLP
CCCCEEEEEECCCEECCCHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
SWDVAVSREIQQAIREACPGVIINHTSGTSGPHYEGPLACIRETRPEIAACNAGSLNYLK
CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCEEEE
VKSDNNWAWPPMMFDNSVEKIQDFLAAMRDAGTIPEFECFDVGIVRCVGMYVQTGMYDGP
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
LEYNFVMGVASGMPADPELLPILLKLKRPEAHWQVTAIGRSEIWPLHQACADLGGHLRTG
CCEEEEEEECCCCCCCHHHHHHHHEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
LEDTFYLANGEKVTSNGQLIEEIAGCARRAGREIASPAEARKIFGVLN
CCCEEEEECCCEECCCCHHHHHHHHHHHHHCHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SDKAVITCSLNGVLTDPKQHHVPVTPEQMAREARAAYDAGAAIVHIHLRDQRPDKGHLP
CCCEEEEEECCCEECCCHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
SWDVAVSREIQQAIREACPGVIINHTSGTSGPHYEGPLACIRETRPEIAACNAGSLNYLK
CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCEEEE
VKSDNNWAWPPMMFDNSVEKIQDFLAAMRDAGTIPEFECFDVGIVRCVGMYVQTGMYDGP
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
LEYNFVMGVASGMPADPELLPILLKLKRPEAHWQVTAIGRSEIWPLHQACADLGGHLRTG
CCEEEEEEECCCCCCCHHHHHHHHEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
LEDTFYLANGEKVTSNGQLIEEIAGCARRAGREIASPAEARKIFGVLN
CCCEEEEECCCEECCCCHHHHHHHHHHHHHCHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA