| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yncD [H]
Identifier: 86750260
GI number: 86750260
Start: 3601499
End: 3603856
Strand: Reverse
Name: yncD [H]
Synonym: RPB_3149
Alternate gene names: 86750260
Gene position: 3603856-3601499 (Counterclockwise)
Preceding gene: 86750264
Following gene: 86750259
Centisome position: 67.59
GC content: 66.03
Gene sequence:
>2358_bases ATGAATTTGGTTGCGCAGACGAAGACCGAAACAGCGATGGACGCCAATCGGCGCGCGAGCCGCCGGGGATCGTTGCGGAC GATGACCGCCGCCGTGCTGTTGTCGTCGACCAGCCAGGCCTGCCTCGCGCAGTCGGCGACGCCCGGGTCGACGATCACGC TGGAGCCGGTCGTCGTCGAAGCGCCGCGGCAGCCGGTTCGATCGGTCGTCCGTCAGCGCTCGCCGGCTCCGCGTTCGGCG GCGACCGTGATGCCCGCGGCGACTCCCTCGTTGGCGCTGCTTGCGGATGTCGTCCGTCAGCGCTTCGAGATCCTGCCGGG CGGCGTCGCGCTGGTGTCGCGGCAGGACATGGCCAATCGCGGCAATCCGACGCTCGCCAACAGCCTGAGCGGTGTCCCCG GACTGATCGTGCAGAACTTCCTCGGCTCCAACGATCAGCCGCGGATTCAGATGCGCGGCTCCGCCCAGCAAAATCCGGCC GAACGCGGCGTTCTCGTGCTCAGCAACGGGCTGCCGATCAATCGCGCCGACGGCTCCTACATCATCGGCTTCGCCAATGC GCAACAGGCCGAGTCGATCGAGGTGTATCGCGGCTATATGGCCAACCGTCTCGGCGCCACGGTGCTGAGCGGCGCGATCA ACTTCGTGTCGCCGACCGGATCGAGCCAGCCGGGCACCCAGATCGGCGTCAGCGGCGGCAGCTTCGGCCAGATCAATAGC AGTGGGCAGGTCGGCGGCAAGAAGGACAATGTCGACGCGTTCATCCAGTTCGACACCAGCCGCCGCGACGGCTATCGCGG CTACAATTCGTCGGAGCGCGTCAGCGTCAACGGCAATGTCGGCGTCGCGCTGTCGGAGAACGTCAAGACCCGCTTCTTCA TGGGCTATACCGATCTCGGCTTCGACGTCCCGGGGCCGGTGAACAAGACCACGCTGTACGCCAATCCGAAGCAGGTCAAC CCGGGCCCGACGGTGGTCGGAGGCGTTGCTGTCAATCCCGGTCCCAACGCCGTGCGCGACAAGCCGCGGCGCGAGGCCAG CCAGTTCATGGTCGGCAACCGCACCACGGCTGTGTTCGACGCGCATCTGTTCGACGTCGCGATGGGCTACATCTACACCG ACGACACGTTCCGCTTCCCGATCTCCTCGGGTGTGCGCACCACGCAGGGCGGCGACTTCACCGGCGTGGCCCGCTACGCC TACAATCCGGCGGCGGCACTGCTGCCGCTGTTCGAGACCACCGCGCAATACACCGTTGGTTCGGCCGATCGCGGCTACTA CCTCAACCAGAGCGGCCAGACCGGGGCGCAATTCGGCGCCAACCGGCTGAACGCCCAGACGTTGTCGCTGTACACCGGCG CCAACATTCCGGTCTGGCACCAACTCGTGGTGTCGCCGTCGATCTCCTACGCCTATGCGACGCGGGACAACGACGATGTG TACGGTTCGGCGCGACGGCCGACGATCGCCTACAACCCGGCGAATCCCACGGTGCTGCTGCCGAACGGATCTGTGGCGAC GCAAAGCACCAGCTATTCGCGCAACTATTCAGGCTGGAGTCCGAGCCTGGCCTTGAGCTATCGGCCGGACGCGGTGCAGA CCTTCTTCATCGCCGGCAGCCACAGCTTCGAGCCGCCGACTCACGACGATCTGATCGCGACGATCAACGGAACGCCGAAT TCGAGCCCCGGCCGGCCGACGCCGGGCAACCCGTCGCTAGCGGCGGCGGCGTTCGCGACGCCGAATCTTAGCGCGCAGAC GGCGAACACGGTGGAGGGCGGCTGGCGCGGTCGCGCCGATCGCTTCTCCTGGGACGTCGTGACTTACTATTCGTGGGTCG ACAACGAGTTGCTCACGCTGCGGGACGTCACCGGCGCGCTGCTGGGGGCGGTCAACGCCGACCGCACGACGCATTTCGGT GTCGAACTCGGGGCCGGAATGAAGTTCACCGATCGGCTGTCCGGTCGCATCGCCTACACCTATCAGGATTTCCGCTTCGT CGACGATCCGAGCCGCGGCAACAACCGGCTGGGCGGTGTGGTGCCGCATCTGATCTATGCGCAATTGCAGTTGCAGGCGA CCGACGCCTGGATGGTGCAGGGCGCGGTCCGCTGGAGTCCGGCCGAGGTGGCGGTCGACAACATGAACACGCTGTTCGCC GACCCCTATGCGGTGGTCGACCTGCGCAGCGAGTACCAGATTGACAAGACCTTCCGGGTGTTCGGCGAGATCACCAATCT GTTCGACAAGACCTATGCGGCGACCACCCTGGTGGTCGATCAGGCGACGGCCAGCCAGGCGGCATTCCTGCCGGCCGACG GACGGGGCTTCTACGCGGGTATCAAGGCAAAGTTCTGA
Upstream 100 bases:
>100_bases TGCGGGCGAGGGCGGCTTTTCATTTTTGAACAGTGGAAACGGCATCGACGCGGGGACACCGAGGCTCCTGCGCGATGATC GAATGGACAGGGGCATTCCG
Downstream 100 bases:
>100_bases TCAGCAAGGACATCGAGTTCGACATGAGCATGCGTGCAAGACTGGCGGCGTTGACCGTCGTCACCATTCTCTCCACGGCG GCGGCGGCGGAATCGCCGAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MNLVAQTKTETAMDANRRASRRGSLRTMTAAVLLSSTSQACLAQSATPGSTITLEPVVVEAPRQPVRSVVRQRSPAPRSA ATVMPAATPSLALLADVVRQRFEILPGGVALVSRQDMANRGNPTLANSLSGVPGLIVQNFLGSNDQPRIQMRGSAQQNPA ERGVLVLSNGLPINRADGSYIIGFANAQQAESIEVYRGYMANRLGATVLSGAINFVSPTGSSQPGTQIGVSGGSFGQINS SGQVGGKKDNVDAFIQFDTSRRDGYRGYNSSERVSVNGNVGVALSENVKTRFFMGYTDLGFDVPGPVNKTTLYANPKQVN PGPTVVGGVAVNPGPNAVRDKPRREASQFMVGNRTTAVFDAHLFDVAMGYIYTDDTFRFPISSGVRTTQGGDFTGVARYA YNPAAALLPLFETTAQYTVGSADRGYYLNQSGQTGAQFGANRLNAQTLSLYTGANIPVWHQLVVSPSISYAYATRDNDDV YGSARRPTIAYNPANPTVLLPNGSVATQSTSYSRNYSGWSPSLALSYRPDAVQTFFIAGSHSFEPPTHDDLIATINGTPN SSPGRPTPGNPSLAAAAFATPNLSAQTANTVEGGWRGRADRFSWDVVTYYSWVDNELLTLRDVTGALLGAVNADRTTHFG VELGAGMKFTDRLSGRIAYTYQDFRFVDDPSRGNNRLGGVVPHLIYAQLQLQATDAWMVQGAVRWSPAEVAVDNMNTLFA DPYAVVDLRSEYQIDKTFRVFGEITNLFDKTYAATTLVVDQATASQAAFLPADGRGFYAGIKAKF
Sequences:
>Translated_785_residues MNLVAQTKTETAMDANRRASRRGSLRTMTAAVLLSSTSQACLAQSATPGSTITLEPVVVEAPRQPVRSVVRQRSPAPRSA ATVMPAATPSLALLADVVRQRFEILPGGVALVSRQDMANRGNPTLANSLSGVPGLIVQNFLGSNDQPRIQMRGSAQQNPA ERGVLVLSNGLPINRADGSYIIGFANAQQAESIEVYRGYMANRLGATVLSGAINFVSPTGSSQPGTQIGVSGGSFGQINS SGQVGGKKDNVDAFIQFDTSRRDGYRGYNSSERVSVNGNVGVALSENVKTRFFMGYTDLGFDVPGPVNKTTLYANPKQVN PGPTVVGGVAVNPGPNAVRDKPRREASQFMVGNRTTAVFDAHLFDVAMGYIYTDDTFRFPISSGVRTTQGGDFTGVARYA YNPAAALLPLFETTAQYTVGSADRGYYLNQSGQTGAQFGANRLNAQTLSLYTGANIPVWHQLVVSPSISYAYATRDNDDV YGSARRPTIAYNPANPTVLLPNGSVATQSTSYSRNYSGWSPSLALSYRPDAVQTFFIAGSHSFEPPTHDDLIATINGTPN SSPGRPTPGNPSLAAAAFATPNLSAQTANTVEGGWRGRADRFSWDVVTYYSWVDNELLTLRDVTGALLGAVNADRTTHFG VELGAGMKFTDRLSGRIAYTYQDFRFVDDPSRGNNRLGGVVPHLIYAQLQLQATDAWMVQGAVRWSPAEVAVDNMNTLFA DPYAVVDLRSEYQIDKTFRVFGEITNLFDKTYAATTLVVDQATASQAAFLPADGRGFYAGIKAKF >Mature_785_residues MNLVAQTKTETAMDANRRASRRGSLRTMTAAVLLSSTSQACLAQSATPGSTITLEPVVVEAPRQPVRSVVRQRSPAPRSA ATVMPAATPSLALLADVVRQRFEILPGGVALVSRQDMANRGNPTLANSLSGVPGLIVQNFLGSNDQPRIQMRGSAQQNPA ERGVLVLSNGLPINRADGSYIIGFANAQQAESIEVYRGYMANRLGATVLSGAINFVSPTGSSQPGTQIGVSGGSFGQINS SGQVGGKKDNVDAFIQFDTSRRDGYRGYNSSERVSVNGNVGVALSENVKTRFFMGYTDLGFDVPGPVNKTTLYANPKQVN PGPTVVGGVAVNPGPNAVRDKPRREASQFMVGNRTTAVFDAHLFDVAMGYIYTDDTFRFPISSGVRTTQGGDFTGVARYA YNPAAALLPLFETTAQYTVGSADRGYYLNQSGQTGAQFGANRLNAQTLSLYTGANIPVWHQLVVSPSISYAYATRDNDDV YGSARRPTIAYNPANPTVLLPNGSVATQSTSYSRNYSGWSPSLALSYRPDAVQTFFIAGSHSFEPPTHDDLIATINGTPN SSPGRPTPGNPSLAAAAFATPNLSAQTANTVEGGWRGRADRFSWDVVTYYSWVDNELLTLRDVTGALLGAVNADRTTHFG VELGAGMKFTDRLSGRIAYTYQDFRFVDDPSRGNNRLGGVVPHLIYAQLQLQATDAWMVQGAVRWSPAEVAVDNMNTLFA DPYAVVDLRSEYQIDKTFRVFGEITNLFDKTYAATTLVVDQATASQAAFLPADGRGFYAGIKAKF
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787723, Length=707, Percent_Identity=21.4992927864215, Blast_Score=109, Evalue=6e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 84035; Mature: 84035
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLVAQTKTETAMDANRRASRRGSLRTMTAAVLLSSTSQACLAQSATPGSTITLEPVVVE CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEE APRQPVRSVVRQRSPAPRSAATVMPAATPSLALLADVVRQRFEILPGGVALVSRQDMANR CCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHCC GNPTLANSLSGVPGLIVQNFLGSNDQPRIQMRGSAQQNPAERGVLVLSNGLPINRADGSY CCCCHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCEECCCCCE IIGFANAQQAESIEVYRGYMANRLGATVLSGAINFVSPTGSSQPGTQIGVSGGSFGQINS EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECCCCCCCCCC SGQVGGKKDNVDAFIQFDTSRRDGYRGYNSSERVSVNGNVGVALSENVKTRFFMGYTDLG CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCCEEEEEEEECCC FDVPGPVNKTTLYANPKQVNPGPTVVGGVAVNPGPNAVRDKPRREASQFMVGNRTTAVFD CCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHCCCHHHHHHHHEECCCEEEEEH AHLFDVAMGYIYTDDTFRFPISSGVRTTQGGDFTGVARYAYNPAAALLPLFETTAQYTVG HHHHHHHCCEEEECCEEEECCCCCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHCEEEC SADRGYYLNQSGQTGAQFGANRLNAQTLSLYTGANIPVWHQLVVSPSISYAYATRDNDDV CCCCCEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCC YGSARRPTIAYNPANPTVLLPNGSVATQSTSYSRNYSGWSPSLALSYRPDAVQTFFIAGS CCCCCCCEEEECCCCCEEEECCCCEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECC HSFEPPTHDDLIATINGTPNSSPGRPTPGNPSLAAAAFATPNLSAQTANTVEGGWRGRAD CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC RFSWDVVTYYSWVDNELLTLRDVTGALLGAVNADRTTHFGVELGAGMKFTDRLSGRIAYT CEEEEEEEEEECCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCEEHHCCCCEEEEE YQDFRFVDDPSRGNNRLGGVVPHLIYAQLQLQATDAWMVQGAVRWSPAEVAVDNMNTLFA EECEEEECCCCCCCCCCCCHHHHHEEEEEEEEECCEEEEECEEEECCHHEEECCCCEEEC DPYAVVDLRSEYQIDKTFRVFGEITNLFDKTYAATTLVVDQATASQAAFLPADGRGFYAG CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCCEEEEE IKAKF EEECC >Mature Secondary Structure MNLVAQTKTETAMDANRRASRRGSLRTMTAAVLLSSTSQACLAQSATPGSTITLEPVVVE CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEE APRQPVRSVVRQRSPAPRSAATVMPAATPSLALLADVVRQRFEILPGGVALVSRQDMANR CCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHCC GNPTLANSLSGVPGLIVQNFLGSNDQPRIQMRGSAQQNPAERGVLVLSNGLPINRADGSY CCCCHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCEECCCCCE IIGFANAQQAESIEVYRGYMANRLGATVLSGAINFVSPTGSSQPGTQIGVSGGSFGQINS EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECCCCCCCCCC SGQVGGKKDNVDAFIQFDTSRRDGYRGYNSSERVSVNGNVGVALSENVKTRFFMGYTDLG CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCCCCEEEEEEEECCC FDVPGPVNKTTLYANPKQVNPGPTVVGGVAVNPGPNAVRDKPRREASQFMVGNRTTAVFD CCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHCCCHHHHHHHHEECCCEEEEEH AHLFDVAMGYIYTDDTFRFPISSGVRTTQGGDFTGVARYAYNPAAALLPLFETTAQYTVG HHHHHHHCCEEEECCEEEECCCCCCEECCCCCCCEEEEEECCCHHHHHHHHHHHHCEEEC SADRGYYLNQSGQTGAQFGANRLNAQTLSLYTGANIPVWHQLVVSPSISYAYATRDNDDV CCCCCEEECCCCCCHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCC YGSARRPTIAYNPANPTVLLPNGSVATQSTSYSRNYSGWSPSLALSYRPDAVQTFFIAGS CCCCCCCEEEECCCCCEEEECCCCEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECC HSFEPPTHDDLIATINGTPNSSPGRPTPGNPSLAAAAFATPNLSAQTANTVEGGWRGRAD CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC RFSWDVVTYYSWVDNELLTLRDVTGALLGAVNADRTTHFGVELGAGMKFTDRLSGRIAYT CEEEEEEEEEECCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCEEHHCCCCEEEEE YQDFRFVDDPSRGNNRLGGVVPHLIYAQLQLQATDAWMVQGAVRWSPAEVAVDNMNTLFA EECEEEECCCCCCCCCCCCHHHHHEEEEEEEEECCEEEEECEEEECCHHEEECCCCEEEC DPYAVVDLRSEYQIDKTFRVFGEITNLFDKTYAATTLVVDQATASQAAFLPADGRGFYAG CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCCEEEEE IKAKF EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]