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The map label for this gene is yodQ [H]

Identifier: 86750246

GI number: 86750246

Start: 3582812

End: 3584110

Strand: Reverse

Name: yodQ [H]

Synonym: RPB_3135

Alternate gene names: 86750246

Gene position: 3584110-3582812 (Counterclockwise)

Preceding gene: 86750247

Following gene: 86750245

Centisome position: 67.22

GC content: 65.9

Gene sequence:

>1299_bases
GTGACGACTGAGACATTGACGAAATCGGATGCGATCACCGAGAGCCTGCGGGCCGCCGTCGATCGCAATTTCGACGACCA
GGTCGCGTTTCTCCAGCGCATGGTGCAGTTCCGCAGCTTGCGCGGCGAGGAGGCGCCGCAGCAGGCATGGCTGGCGCAGC
AATTCGCCGCGCGTGGCTACAAGGTCGATACGTTCAGTCTCGCCGACGTCGATATCGCCAGCCATCCCAAGGCGGCGCCG
ATGGATACGATTGATCCGGCCGGCTCGATGCAGGTCGTCGCCACCGCCGAGAGCGATGGCAAGGGCCGCAGCCTGATCCT
GCAGGGCCATATCGACGTGGTGCCGGAAGGCCCGGTCGATCTATGGAGCGATCCACCGTTCGAGGCCACAGTTCGCGACG
GCTGGATGATCGGCCGCGGCGCGCAGGACATGAAGGGCGGCGTGTCGGCGATGATCTTCGCGCTGGATGCGATCCGAGCC
GCCGGCTACGCGCCCGACGCGCGCGTGCATGTGCAGACGGTGACCGAAGAGGAAAGCACCGGCAACGGCGCGCTCTCGAC
GCTGATGCGCGGCTATCGGGCCGATGCCTGCCTGATCCCCGAGCCGACCGGCCACACGCTGACGCGCGCTCAGGTCGGTG
CGATCTGGTTCCGGCTGCGGGTGCGCGGCACGCCGGTTCACGTCGCCTATTCGGAGACCGGCACCAGCGCCATTCTGTCG
GCGATGCATCTGGTGCGCGCGTTCGAGGACTACACCAAGACGCTGAATGCGGCGGCGGTGCGCGATCCGTGGTTCGGGCA
GATCAAGAACCCGATCAAGTTCAATGTCGGCATCATCAAGGGTGGCGACTGGGCGAGTTCGACCGCCGCATGGTGCGAAG
TCGATTGCCGCCTCGGTCTGCTCACCGGCGATACGCCGGAAGAGGCGATGCGCGGCATCGAGAAATGCCTCGCCGATGCG
CAGGCGGCCGACGCCTTCCTGTCGGAAAATCCAGCCGAACTGATCTGGAGCGGCTTCAAGGCCGATCCAGCGGTGTGCGA
GCCGGGCGGCGTGGCGGAATCCGTGCTCGCTTCTGCGCATAAAACGGCCTTCAATGCGCCGCTCGACGCCCGGCTGTCTA
CGGCCGTCAACGACACCCGTTACTACTCGGTCGACTACGGCATTCCGGCGCTGTGCTACGGACCCTACGGCCAGGGGCCG
CACGCGTTCGACGAGCGCATCGATCTCGAAAGCCTGCGCAAGACGACGCTGAGCATCGCGCTGTTCGTCGCGGAATGGTG
TGGGCTGAGGAAGCTGTGA

Upstream 100 bases:

>100_bases
GAGGAATATGTCGAGACCAAATACATCCTGCTCGGCGGTCTCGATCGCTGACGCTGTCATCTGCATTGCGACGACTATCA
GATCCAGGGGAGACCGAGGC

Downstream 100 bases:

>100_bases
TGGCAGTCGCGGCACCGGCGGCGTCCGCCATGCAATCGATGACGGGAGCAGACCGGCTTTGCGATGCGCTACTGGCGCAC
GAGGTCGATGTCTGCTTCGC

Product: acetylornithine deacetylase

Products: acetate; L-ornithine

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MTTETLTKSDAITESLRAAVDRNFDDQVAFLQRMVQFRSLRGEEAPQQAWLAQQFAARGYKVDTFSLADVDIASHPKAAP
MDTIDPAGSMQVVATAESDGKGRSLILQGHIDVVPEGPVDLWSDPPFEATVRDGWMIGRGAQDMKGGVSAMIFALDAIRA
AGYAPDARVHVQTVTEEESTGNGALSTLMRGYRADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYSETGTSAILS
AMHLVRAFEDYTKTLNAAAVRDPWFGQIKNPIKFNVGIIKGGDWASSTAAWCEVDCRLGLLTGDTPEEAMRGIEKCLADA
QAADAFLSENPAELIWSGFKADPAVCEPGGVAESVLASAHKTAFNAPLDARLSTAVNDTRYYSVDYGIPALCYGPYGQGP
HAFDERIDLESLRKTTLSIALFVAEWCGLRKL

Sequences:

>Translated_432_residues
MTTETLTKSDAITESLRAAVDRNFDDQVAFLQRMVQFRSLRGEEAPQQAWLAQQFAARGYKVDTFSLADVDIASHPKAAP
MDTIDPAGSMQVVATAESDGKGRSLILQGHIDVVPEGPVDLWSDPPFEATVRDGWMIGRGAQDMKGGVSAMIFALDAIRA
AGYAPDARVHVQTVTEEESTGNGALSTLMRGYRADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYSETGTSAILS
AMHLVRAFEDYTKTLNAAAVRDPWFGQIKNPIKFNVGIIKGGDWASSTAAWCEVDCRLGLLTGDTPEEAMRGIEKCLADA
QAADAFLSENPAELIWSGFKADPAVCEPGGVAESVLASAHKTAFNAPLDARLSTAVNDTRYYSVDYGIPALCYGPYGQGP
HAFDERIDLESLRKTTLSIALFVAEWCGLRKL
>Mature_431_residues
TTETLTKSDAITESLRAAVDRNFDDQVAFLQRMVQFRSLRGEEAPQQAWLAQQFAARGYKVDTFSLADVDIASHPKAAPM
DTIDPAGSMQVVATAESDGKGRSLILQGHIDVVPEGPVDLWSDPPFEATVRDGWMIGRGAQDMKGGVSAMIFALDAIRAA
GYAPDARVHVQTVTEEESTGNGALSTLMRGYRADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYSETGTSAILSA
MHLVRAFEDYTKTLNAAAVRDPWFGQIKNPIKFNVGIIKGGDWASSTAAWCEVDCRLGLLTGDTPEEAMRGIEKCLADAQ
AADAFLSENPAELIWSGFKADPAVCEPGGVAESVLASAHKTAFNAPLDARLSTAVNDTRYYSVDYGIPALCYGPYGQGPH
AFDERIDLESLRKTTLSIALFVAEWCGLRKL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fifth step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1788816, Length=213, Percent_Identity=30.9859154929577, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789236, Length=337, Percent_Identity=25.2225519287834, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790395, Length=212, Percent_Identity=28.7735849056604, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16

Molecular weight: Translated: 46661; Mature: 46530

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTETLTKSDAITESLRAAVDRNFDDQVAFLQRMVQFRSLRGEEAPQQAWLAQQFAARGY
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
KVDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATAESDGKGRSLILQGHIDVVPEGPVD
EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCCCCCC
LWSDPPFEATVRDGWMIGRGAQDMKGGVSAMIFALDAIRAAGYAPDARVHVQTVTEEEST
CCCCCCCCEEECCCEEECCCCHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
GNGALSTLMRGYRADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYSETGTSAILS
CCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHCEEEEEEEECCCEEEEEECCCCHHHHHH
AMHLVRAFEDYTKTLNAAAVRDPWFGQIKNPIKFNVGIIKGGDWASSTAAWCEVDCRLGL
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEE
LTGDTPEEAMRGIEKCLADAQAADAFLSENPAELIWSGFKADPAVCEPGGVAESVLASAH
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
KTAFNAPLDARLSTAVNDTRYYSVDYGIPALCYGPYGQGPHAFDERIDLESLRKTTLSIA
HHHCCCCCCHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHH
LFVAEWCGLRKL
HHHHHHHCCCCC
>Mature Secondary Structure 
TTETLTKSDAITESLRAAVDRNFDDQVAFLQRMVQFRSLRGEEAPQQAWLAQQFAARGY
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
KVDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATAESDGKGRSLILQGHIDVVPEGPVD
EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCCCCCC
LWSDPPFEATVRDGWMIGRGAQDMKGGVSAMIFALDAIRAAGYAPDARVHVQTVTEEEST
CCCCCCCCEEECCCEEECCCCHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
GNGALSTLMRGYRADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYSETGTSAILS
CCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHCEEEEEEEECCCEEEEEECCCCHHHHHH
AMHLVRAFEDYTKTLNAAAVRDPWFGQIKNPIKFNVGIIKGGDWASSTAAWCEVDCRLGL
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEE
LTGDTPEEAMRGIEKCLADAQAADAFLSENPAELIWSGFKADPAVCEPGGVAESVLASAH
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
KTAFNAPLDARLSTAVNDTRYYSVDYGIPALCYGPYGQGPHAFDERIDLESLRKTTLSIA
HHHCCCCCCHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHH
LFVAEWCGLRKL
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-acetyl-L-ornithine; H2O

Specific reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]