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The map label for this gene is ycdC [C]

Identifier: 86750214

GI number: 86750214

Start: 3533562

End: 3534254

Strand: Reverse

Name: ycdC [C]

Synonym: RPB_3101

Alternate gene names: 86750214

Gene position: 3534254-3533562 (Counterclockwise)

Preceding gene: 86750215

Following gene: 86750213

Centisome position: 66.29

GC content: 62.05

Gene sequence:

>693_bases
TTGGCGCGCAGAAGCAGTGATCCGGCTCGCGTTCGCGAGAAGATACTCAAGCTCGCCATGGAGGAATTCGCTCGCACCGG
CTTCGACGGCGCGCGGGTCGACCGGATCGCGGAGCGATCCAAGGTCAGCAAGAACATGCTGTATTACTACTTCAAGTCGA
AGGAAGGGCTGTTCGTCGCGGCGCTGGAGCGGATGTACGAGGAGGTGCGCGACCAGCAGCGCGAGCTGTCCGTCCGCGCC
CATGACCCGATCCTGGCGATGAAGCAACTCGTCGAACACACCTTCCAGGCGCTCGAGAGCAATCCGAACGCGATCCGGCT
GATGAACGAAGAGAACAAGCAGCGCGGCCGGTTTCTGCGAAAATCCAAGCGGATCCGCGATCTCTACAATCCGCTGGTGG
AAACGATCAGCTTCATCCTCGAACGCGGCCGGGTGGAAGGCGTGTTCCGGCCTGGCCTCGACTCGGCGGTCGTCTACATG
ACGCTGTCGTCGCTGTGTTATCATTATCTGTCCAACCGCTACACGCTCGAAATCGCGTTGGGCAAGGATCTCGCCTCGGC
AGCCTCGCGCAAGGCCTGGGTCGAACACGTCGGCAACATCGTGCTGCTGTACTGCACAGCAGAAGTGCCGAGCACGACCG
CGGCGAAGACCGCCGTGATGCGGCAACGCGCGACGTCCGACGCAGACGCGTAG

Upstream 100 bases:

>100_bases
AAAGTCCTAAGTTCGATTGATTTTTCCTCGCGGCCCAGCATAGTTGCGGACGGGCAGGGCCGCCTATTTCGGCCGCCGCT
CGGCCATGGAGGATAGCGGC

Downstream 100 bases:

>100_bases
TCTTTCAACGCACATGAATGCGGTCCGTGCGGCGCGTGCCGCTTCGGCATGCGACTGTGACGCCGTGCGCGCTGCGCGGC
GTCCGAATTAGCAGTCGCTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; Transcriptional Regulator TetR/AcrR Family; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; HTH-Type Transcriptional Regulator RutR; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MARRSSDPARVREKILKLAMEEFARTGFDGARVDRIAERSKVSKNMLYYYFKSKEGLFVAALERMYEEVRDQQRELSVRA
HDPILAMKQLVEHTFQALESNPNAIRLMNEENKQRGRFLRKSKRIRDLYNPLVETISFILERGRVEGVFRPGLDSAVVYM
TLSSLCYHYLSNRYTLEIALGKDLASAASRKAWVEHVGNIVLLYCTAEVPSTTAAKTAVMRQRATSDADA

Sequences:

>Translated_230_residues
MARRSSDPARVREKILKLAMEEFARTGFDGARVDRIAERSKVSKNMLYYYFKSKEGLFVAALERMYEEVRDQQRELSVRA
HDPILAMKQLVEHTFQALESNPNAIRLMNEENKQRGRFLRKSKRIRDLYNPLVETISFILERGRVEGVFRPGLDSAVVYM
TLSSLCYHYLSNRYTLEIALGKDLASAASRKAWVEHVGNIVLLYCTAEVPSTTAAKTAVMRQRATSDADA
>Mature_229_residues
ARRSSDPARVREKILKLAMEEFARTGFDGARVDRIAERSKVSKNMLYYYFKSKEGLFVAALERMYEEVRDQQRELSVRAH
DPILAMKQLVEHTFQALESNPNAIRLMNEENKQRGRFLRKSKRIRDLYNPLVETISFILERGRVEGVFRPGLDSAVVYMT
LSSLCYHYLSNRYTLEIALGKDLASAASRKAWVEHVGNIVLLYCTAEVPSTTAAKTAVMRQRATSDADA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26346; Mature: 26214

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRSSDPARVREKILKLAMEEFARTGFDGARVDRIAERSKVSKNMLYYYFKSKEGLFVA
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHH
ALERMYEEVRDQQRELSVRAHDPILAMKQLVEHTFQALESNPNAIRLMNEENKQRGRFLR
HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
KSKRIRDLYNPLVETISFILERGRVEGVFRPGLDSAVVYMTLSSLCYHYLSNRYTLEIAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
GKDLASAASRKAWVEHVGNIVLLYCTAEVPSTTAAKTAVMRQRATSDADA
CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ARRSSDPARVREKILKLAMEEFARTGFDGARVDRIAERSKVSKNMLYYYFKSKEGLFVA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHH
ALERMYEEVRDQQRELSVRAHDPILAMKQLVEHTFQALESNPNAIRLMNEENKQRGRFLR
HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
KSKRIRDLYNPLVETISFILERGRVEGVFRPGLDSAVVYMTLSSLCYHYLSNRYTLEIAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
GKDLASAASRKAWVEHVGNIVLLYCTAEVPSTTAAKTAVMRQRATSDADA
CCHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA