| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is oppD [H]
Identifier: 86750193
GI number: 86750193
Start: 3510369
End: 3511373
Strand: Reverse
Name: oppD [H]
Synonym: RPB_3079
Alternate gene names: 86750193
Gene position: 3511373-3510369 (Counterclockwise)
Preceding gene: 86750194
Following gene: 86750192
Centisome position: 65.86
GC content: 64.08
Gene sequence:
>1005_bases ATGGCGGCGCTGCTCGAAATTCGCGATCTCGAAGTTGATCTGTTCACGCGGCGCGGCGTGATGCGCGCGATCGACCGCTT TTCCCTCACCGTCGAACACGGGCAGACGCTTGGCCTGGTCGGTGAGTCCGGCTGCGGCAAATCCATGACTTCGCTGGCGA TCATGGGGCTGCTACCGATGCCGCCGGCAAAGGTGACGGGCGGCGCCATTCTGCTCGAAGGCCGCGATCTCATCGGCTTG AGCGACACCAGGATGCAAGCGGTGCGGGGACGCGAGATCGGGATCATCTTCCAGGACCCGATGAGCTCGCTGAACCCGGT CTACACCGTCGGCTATCAGCTCACCGAGGTGCTCCGCCGGCATTTCAAGCTGGATCGACGCGCCGCGGACAGGCGGGCGT TGGAATTGCTGGACCGGGTGCACATTCCGGATGCCCGGCGTCGCTTCGATGCCTATCCGCACGAATTGTCCGGCGGCATG AATCAGCGCGTCGTCATCGCCATGGCGATCGCGTGCGAGCCGAAGTTGCTGATCGCCGACGAACCGACCACGGCGCTCGA CGTCACCATCCAGGCACAGATCATCGAACTGCTCAAGGACATCCAGCGCGAATCCCGGATGGGGATGATCTTCATCACCC ACGATCTCGGGGTGATCGCCGATGTCGCCGACCGCGTCACCGTGATGTACGCGGGCAAGAAGGCCGAGGAGGCACCGGTT GGCGTACTCTTCGACGATCCACGCCATCCCTATACGCGGGGTCTGATCGGCGCCACGCCGAAGCCGGGCGAGGAACGGCG GCGGCGGCTCGTCGAAATTCCCGGGACCGTGCCGGGCTTATCGGACCGTCCGAAAGGCTGCGCTTTCGCCAACCGCTGTC CGCTGGTGTTCGAGCGTTGCCGCGTCGAACATCCGGCTTTGATCAATCAGGGTGCGGGCCACGAGGCTGCCTGCTTCCTG GCTACCGAAACGGAGGACTACAATGTCGCTTCTGTCGGTGCGTAG
Upstream 100 bases:
>100_bases GCGATCCCCGGCGTTGCGATCATGCTGACGGTGCTGGCGATGAACCTGATCGGCGATGGGCTGAATGACGCGCTCAATCC CAAGCTGAGGGACCGCTGAG
Downstream 100 bases:
>100_bases TCTCGTCGTCGATTATCAAACGTCGTCCGGCGTCGTCCACGCGGTGAACGACGTCAGCCTGGAGATCGAGCCGGGTGAAA CGGTGGGCCTCGTCGGGGAA
Product: oligopeptide/dipeptide ABC transporter, ATP-binding protein-like
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MAALLEIRDLEVDLFTRRGVMRAIDRFSLTVEHGQTLGLVGESGCGKSMTSLAIMGLLPMPPAKVTGGAILLEGRDLIGL SDTRMQAVRGREIGIIFQDPMSSLNPVYTVGYQLTEVLRRHFKLDRRAADRRALELLDRVHIPDARRRFDAYPHELSGGM NQRVVIAMAIACEPKLLIADEPTTALDVTIQAQIIELLKDIQRESRMGMIFITHDLGVIADVADRVTVMYAGKKAEEAPV GVLFDDPRHPYTRGLIGATPKPGEERRRRLVEIPGTVPGLSDRPKGCAFANRCPLVFERCRVEHPALINQGAGHEAACFL ATETEDYNVASVGA
Sequences:
>Translated_334_residues MAALLEIRDLEVDLFTRRGVMRAIDRFSLTVEHGQTLGLVGESGCGKSMTSLAIMGLLPMPPAKVTGGAILLEGRDLIGL SDTRMQAVRGREIGIIFQDPMSSLNPVYTVGYQLTEVLRRHFKLDRRAADRRALELLDRVHIPDARRRFDAYPHELSGGM NQRVVIAMAIACEPKLLIADEPTTALDVTIQAQIIELLKDIQRESRMGMIFITHDLGVIADVADRVTVMYAGKKAEEAPV GVLFDDPRHPYTRGLIGATPKPGEERRRRLVEIPGTVPGLSDRPKGCAFANRCPLVFERCRVEHPALINQGAGHEAACFL ATETEDYNVASVGA >Mature_333_residues AALLEIRDLEVDLFTRRGVMRAIDRFSLTVEHGQTLGLVGESGCGKSMTSLAIMGLLPMPPAKVTGGAILLEGRDLIGLS DTRMQAVRGREIGIIFQDPMSSLNPVYTVGYQLTEVLRRHFKLDRRAADRRALELLDRVHIPDARRRFDAYPHELSGGMN QRVVIAMAIACEPKLLIADEPTTALDVTIQAQIIELLKDIQRESRMGMIFITHDLGVIADVADRVTVMYAGKKAEEAPVG VLFDDPRHPYTRGLIGATPKPGEERRRRLVEIPGTVPGLSDRPKGCAFANRCPLVFERCRVEHPALINQGAGHEAACFLA TETEDYNVASVGA
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=214, Percent_Identity=25.2336448598131, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI42490749, Length=244, Percent_Identity=29.9180327868852, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI21536378, Length=216, Percent_Identity=31.0185185185185, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27436953, Length=226, Percent_Identity=26.5486725663717, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27477115, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI6005701, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789963, Length=316, Percent_Identity=49.0506329113924, Blast_Score=315, Evalue=3e-87, Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=46.417445482866, Blast_Score=278, Evalue=3e-76, Organism=Escherichia coli, GI1787759, Length=317, Percent_Identity=43.5331230283912, Blast_Score=261, Evalue=6e-71, Organism=Escherichia coli, GI145693107, Length=308, Percent_Identity=44.8051948051948, Blast_Score=254, Evalue=4e-69, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=48.6486486486487, Blast_Score=245, Evalue=2e-66, Organism=Escherichia coli, GI1787500, Length=330, Percent_Identity=40.3030303030303, Blast_Score=228, Evalue=5e-61, Organism=Escherichia coli, GI1789962, Length=313, Percent_Identity=38.3386581469649, Blast_Score=224, Evalue=4e-60, Organism=Escherichia coli, GI1787548, Length=331, Percent_Identity=37.7643504531722, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1787758, Length=332, Percent_Identity=34.3373493975904, Blast_Score=174, Evalue=9e-45, Organism=Escherichia coli, GI1789890, Length=231, Percent_Identity=41.991341991342, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=39.9082568807339, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=36.71875, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI48994997, Length=243, Percent_Identity=35.3909465020576, Blast_Score=130, Evalue=2e-31, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=30.6513409961686, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=32.03125, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=34.051724137931, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=31.7972350230415, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787370, Length=234, Percent_Identity=31.1965811965812, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=285, Percent_Identity=30.8771929824561, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1789032, Length=248, Percent_Identity=30.241935483871, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=31.640625, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1789672, Length=240, Percent_Identity=32.0833333333333, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081791, Length=259, Percent_Identity=31.6602316602317, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1787029, Length=230, Percent_Identity=30, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1790162, Length=256, Percent_Identity=26.953125, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786703, Length=212, Percent_Identity=35.377358490566, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI87081709, Length=245, Percent_Identity=27.3469387755102, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=29.8642533936652, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI87081834, Length=195, Percent_Identity=33.8461538461538, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786563, Length=223, Percent_Identity=30.9417040358744, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=32.3651452282158, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1788644, Length=260, Percent_Identity=29.2307692307692, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI48995001, Length=218, Percent_Identity=31.1926605504587, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1790467, Length=241, Percent_Identity=30.2904564315353, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1788450, Length=239, Percent_Identity=26.7782426778243, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787792, Length=215, Percent_Identity=31.6279069767442, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=30.3738317757009, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786253, Length=213, Percent_Identity=29.5774647887324, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790190, Length=230, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=247, Percent_Identity=29.9595141700405, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786803, Length=219, Percent_Identity=29.2237442922374, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1789586, Length=236, Percent_Identity=30.0847457627119, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789593, Length=229, Percent_Identity=29.6943231441048, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786319, Length=244, Percent_Identity=27.4590163934426, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1786698, Length=221, Percent_Identity=28.0542986425339, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786345, Length=212, Percent_Identity=30.188679245283, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789991, Length=220, Percent_Identity=25.4545454545455, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1788053, Length=197, Percent_Identity=32.48730964467, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1790534, Length=225, Percent_Identity=29.3333333333333, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788165, Length=229, Percent_Identity=26.2008733624454, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1790544, Length=250, Percent_Identity=26.4, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790739, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790525, Length=244, Percent_Identity=28.2786885245902, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1787164, Length=216, Percent_Identity=28.7037037037037, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786654, Length=238, Percent_Identity=25.6302521008403, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1789864, Length=229, Percent_Identity=24.4541484716157, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193209708, Length=240, Percent_Identity=30.8333333333333, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=30.0448430493274, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=216, Percent_Identity=30.5555555555556, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17558664, Length=282, Percent_Identity=26.5957446808511, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85726357, Length=257, Percent_Identity=27.2373540856031, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24641565, Length=216, Percent_Identity=33.7962962962963, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574150, Length=209, Percent_Identity=26.7942583732057, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI116007328, Length=209, Percent_Identity=26.7942583732057, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24582014, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582012, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85725262, Length=222, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36729; Mature: 36598
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALLEIRDLEVDLFTRRGVMRAIDRFSLTVEHGQTLGLVGESGCGKSMTSLAIMGLLPM CCCEEEEEECEEHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCC PPAKVTGGAILLEGRDLIGLSDTRMQAVRGREIGIIFQDPMSSLNPVYTVGYQLTEVLRR CCCCCCCCEEEEECCCEECCCHHHHHHHCCCEEEEEECCCHHHCCCEEEHHHHHHHHHHH HFKLDRRAADRRALELLDRVHIPDARRRFDAYPHELSGGMNQRVVIAMAIACEPKLLIAD HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCEEEEEEEEECCCEEEEEC EPTTALDVTIQAQIIELLKDIQRESRMGMIFITHDLGVIADVADRVTVMYAGKKAEEAPV CCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCEEEEEECCCCCCCCE GVLFDDPRHPYTRGLIGATPKPGEERRRRLVEIPGTVPGLSDRPKGCAFANRCPLVFERC EEEECCCCCCHHCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH RVEHPALINQGAGHEAACFLATETEDYNVASVGA CCCCCHHHCCCCCCCEEEEEEECCCCCCEEECCC >Mature Secondary Structure AALLEIRDLEVDLFTRRGVMRAIDRFSLTVEHGQTLGLVGESGCGKSMTSLAIMGLLPM CCEEEEEECEEHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCC PPAKVTGGAILLEGRDLIGLSDTRMQAVRGREIGIIFQDPMSSLNPVYTVGYQLTEVLRR CCCCCCCCEEEEECCCEECCCHHHHHHHCCCEEEEEECCCHHHCCCEEEHHHHHHHHHHH HFKLDRRAADRRALELLDRVHIPDARRRFDAYPHELSGGMNQRVVIAMAIACEPKLLIAD HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCEEEEEEEEECCCEEEEEC EPTTALDVTIQAQIIELLKDIQRESRMGMIFITHDLGVIADVADRVTVMYAGKKAEEAPV CCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCEEEEEECCCCCCCCE GVLFDDPRHPYTRGLIGATPKPGEERRRRLVEIPGTVPGLSDRPKGCAFANRCPLVFERC EEEECCCCCCHHCCCCCCCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH RVEHPALINQGAGHEAACFLATETEDYNVASVGA CCCCCHHHCCCCCCCEEEEEEECCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]