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The map label for this gene is omp2b [H]

Identifier: 86750153

GI number: 86750153

Start: 3460395

End: 3461837

Strand: Reverse

Name: omp2b [H]

Synonym: RPB_3036

Alternate gene names: 86750153

Gene position: 3461837-3460395 (Counterclockwise)

Preceding gene: 86750154

Following gene: 86750151

Centisome position: 64.93

GC content: 64.45

Gene sequence:

>1443_bases
ATGAACATGGTTAAGAGCCTTTTCCTTGGCTCCGCGGCGGCTCTCGTCGCCATGAGCGGCGCGCAGGCGGCCGATCTTCC
GTTGAAGGCCAAAGCGGTCGAGTACGTGAAGGTTTGCTCGATCTACGGCGCCGGCTTCTACTACATCCCGGGCACCGACA
CCTGCATCAAGCTCGGCGGCTATCTGCGCGCCGACGTGACGATGTACGGTGGCGCCGCCTATAACGCCCCGGCCTGGAAC
GGCAACGCCGGCCAGCAGAACCGCCTCGCGAACAACACCATCTTCCGTTCGCGCCAGGACATCAACATCGACACCCGCAC
CGCCACTGAATACGGCGTGGTTCGCACCTACTTCGATGCGACCTTCAACTGGACCACGGGCGACGCCGTCGCCGGCGGTA
CGCTCGGCGTCTACTACGCCTTCATCCAGTTCGCCGGCTTCACCTTCGGTAAGGCCGTGTCGCAGTTCGATACGCCCTGG
ACCGGTTATCCGGGCAACAACACCTCGTTCCTGATCGGCGGCTACGACGACGTCACCGGCATCAACCAGGTCGCCTACAC
TGCGGAATTCGGCAACGGCGTGTCGGGCTCGATCTCGCTCGAAGACCAGTCGTCCTACCTGCAGTCGGCGCTGTACAACA
CCTCCGGCCTGACCAACGCCGGCTTCGCCTCGGGCGTGTTCGGCACCAACTCCTACGCCGGTACCCAGATCCCCGACATC
GTCGGTAAGATCCGCGTCGACCAGGCCTGGGGTCTGTTCCAGGTGTCGGCTGCGGCCCACCAGGTTCGCGCTTCCTACTA
CACGCCGGCTCTCGAGACCTCGGGTCATCCGAGCGACACTTGGGGCTACGCGGTGCAGGGCGCAATCTCGCTCAAGAACC
TGCCGACCGGCCCCGGCGACAGCATCAACTTCACGGCGACCTACTCGAACGGTGCGACCCGTTACGTGCTCGGCGGCGTG
AGCCCGAGCTCGTTCGCGATGTACGGCAGCTCCGGCGTCGGCTACCAGAGCCTGGCTCTGGCGGGTGCGGCCGATGGTAT
CTTCGCGGGCACCAACAACATCAACGGCACCGGCATCACCAAGACCGATGCCTGGGGCGTCCGTGGCGCGTTCAACCACA
ACTGGAACCCCAACTGGTCGACCTCGCTGTTCGGTTCGTACACCTCGATCGACTACAACGGCACGGCGACTGCCCAGATC
TGCGCCACGGCTGTCGGGTTCACCTGTAACCCGGACTTCCGTATCGCTCAGATCGGCACCGTCACCCGCTGGACCCCGGT
CAAGAACCTGACGTTCTCGGGCGAAGTGATGTACACCTACCTCGACCAGAGCCATTCGGGTCTGGTGGCCCTGGCTCCGG
GCGCGACCAAGCCGGCCGCGAACTACGAGCTCAAGGACCTCGGCACCTGGAGCGGCAACCTCCGCGTTCAGCGCGTGTTC
TGA

Upstream 100 bases:

>100_bases
GCGGCTAGGCGGGTTTGATTGGGACAAGGGGACCACCCTGCGGATGCGACAGCATCCTGCGGTCAGGAACCTTCCCTAGA
GAGCAAACTTGGAGGTTTAC

Downstream 100 bases:

>100_bases
TCCTGATCGTTCCGCAAGGAACGGGTCACGAAACCCCGGCGGGCAACCGCCGGGGTTTTTCGTTGTGGCATGAGCATTTG
GCGGAAGGTGCGGGAGCCGG

Product: putative Omp2b porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MNMVKSLFLGSAAALVAMSGAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADVTMYGGAAYNAPAWN
GNAGQQNRLANNTIFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGDAVAGGTLGVYYAFIQFAGFTFGKAVSQFDTPW
TGYPGNNTSFLIGGYDDVTGINQVAYTAEFGNGVSGSISLEDQSSYLQSALYNTSGLTNAGFASGVFGTNSYAGTQIPDI
VGKIRVDQAWGLFQVSAAAHQVRASYYTPALETSGHPSDTWGYAVQGAISLKNLPTGPGDSINFTATYSNGATRYVLGGV
SPSSFAMYGSSGVGYQSLALAGAADGIFAGTNNINGTGITKTDAWGVRGAFNHNWNPNWSTSLFGSYTSIDYNGTATAQI
CATAVGFTCNPDFRIAQIGTVTRWTPVKNLTFSGEVMYTYLDQSHSGLVALAPGATKPAANYELKDLGTWSGNLRVQRVF

Sequences:

>Translated_480_residues
MNMVKSLFLGSAAALVAMSGAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADVTMYGGAAYNAPAWN
GNAGQQNRLANNTIFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGDAVAGGTLGVYYAFIQFAGFTFGKAVSQFDTPW
TGYPGNNTSFLIGGYDDVTGINQVAYTAEFGNGVSGSISLEDQSSYLQSALYNTSGLTNAGFASGVFGTNSYAGTQIPDI
VGKIRVDQAWGLFQVSAAAHQVRASYYTPALETSGHPSDTWGYAVQGAISLKNLPTGPGDSINFTATYSNGATRYVLGGV
SPSSFAMYGSSGVGYQSLALAGAADGIFAGTNNINGTGITKTDAWGVRGAFNHNWNPNWSTSLFGSYTSIDYNGTATAQI
CATAVGFTCNPDFRIAQIGTVTRWTPVKNLTFSGEVMYTYLDQSHSGLVALAPGATKPAANYELKDLGTWSGNLRVQRVF
>Mature_480_residues
MNMVKSLFLGSAAALVAMSGAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADVTMYGGAAYNAPAWN
GNAGQQNRLANNTIFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGDAVAGGTLGVYYAFIQFAGFTFGKAVSQFDTPW
TGYPGNNTSFLIGGYDDVTGINQVAYTAEFGNGVSGSISLEDQSSYLQSALYNTSGLTNAGFASGVFGTNSYAGTQIPDI
VGKIRVDQAWGLFQVSAAAHQVRASYYTPALETSGHPSDTWGYAVQGAISLKNLPTGPGDSINFTATYSNGATRYVLGGV
SPSSFAMYGSSGVGYQSLALAGAADGIFAGTNNINGTGITKTDAWGVRGAFNHNWNPNWSTSLFGSYTSIDYNGTATAQI
CATAVGFTCNPDFRIAQIGTVTRWTPVKNLTFSGEVMYTYLDQSHSGLVALAPGATKPAANYELKDLGTWSGNLRVQRVF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 50727; Mature: 50727

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMVKSLFLGSAAALVAMSGAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGG
CCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHEEECCCEEEECCCCCEEEECC
YLRADVTMYGGAAYNAPAWNGNAGQQNRLANNTIFRSRQDINIDTRTATEYGVVRTYFDA
EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEC
TFNWTTGDAVAGGTLGVYYAFIQFAGFTFGKAVSQFDTPWTGYPGNNTSFLIGGYDDVTG
EEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
INQVAYTAEFGNGVSGSISLEDQSSYLQSALYNTSGLTNAGFASGVFGTNSYAGTQIPDI
CCCEEEEEECCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VGKIRVDQAWGLFQVSAAAHQVRASYYTPALETSGHPSDTWGYAVQGAISLKNLPTGPGD
HCEEEECCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
SINFTATYSNGATRYVLGGVSPSSFAMYGSSGVGYQSLALAGAADGIFAGTNNINGTGIT
CEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHEEEECCCCCEEECCCCCCCCCCC
KTDAWGVRGAFNHNWNPNWSTSLFGSYTSIDYNGTATAQICATAVGFTCNPDFRIAQIGT
CCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECC
VTRWTPVKNLTFSGEVMYTYLDQSHSGLVALAPGATKPAANYELKDLGTWSGNLRVQRVF
EEEECCCCCCEECCCEEEEEECCCCCCEEEECCCCCCCCCCEEHHCCCCCCCCEEEEEEC
>Mature Secondary Structure
MNMVKSLFLGSAAALVAMSGAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGG
CCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHEEECCCEEEECCCCCEEEECC
YLRADVTMYGGAAYNAPAWNGNAGQQNRLANNTIFRSRQDINIDTRTATEYGVVRTYFDA
EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEC
TFNWTTGDAVAGGTLGVYYAFIQFAGFTFGKAVSQFDTPWTGYPGNNTSFLIGGYDDVTG
EEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
INQVAYTAEFGNGVSGSISLEDQSSYLQSALYNTSGLTNAGFASGVFGTNSYAGTQIPDI
CCCEEEEEECCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
VGKIRVDQAWGLFQVSAAAHQVRASYYTPALETSGHPSDTWGYAVQGAISLKNLPTGPGD
HCEEEECCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCC
SINFTATYSNGATRYVLGGVSPSSFAMYGSSGVGYQSLALAGAADGIFAGTNNINGTGIT
CEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHEEEECCCCCEEECCCCCCCCCCC
KTDAWGVRGAFNHNWNPNWSTSLFGSYTSIDYNGTATAQICATAVGFTCNPDFRIAQIGT
CCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECC
VTRWTPVKNLTFSGEVMYTYLDQSHSGLVALAPGATKPAANYELKDLGTWSGNLRVQRVF
EEEECCCCCCEECCCEEEEEECCCCCCEEEECCCCCCCCCCEEHHCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]