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The map label for this gene is yhdX [H]

Identifier: 86750028

GI number: 86750028

Start: 3318876

End: 3320081

Strand: Reverse

Name: yhdX [H]

Synonym: RPB_2911

Alternate gene names: 86750028

Gene position: 3320081-3318876 (Counterclockwise)

Preceding gene: 86750029

Following gene: 86750027

Centisome position: 62.27

GC content: 65.92

Gene sequence:

>1206_bases
GTGGCGATCGACGCCCGACCACCGCCGTCGCAATTCGGCGCGAGATTGCGCCGGGCGCTCGGCGGTCGATCCGGCTGGAA
GGGGCTGATCGCGCAGCTGCTGTTCGTCGCGGTGCTGTGCTGGATCGGCTACGCGATCGTCGACAATGCGCGCGACAACC
TCACCAATCAGCGGATCGCGTCCGGCTTCGGCTTCATGTCGCAGACCGCCGGCTTCGGCGTCAGCCAGACGCTGATCCCG
TATGCGGAGTCGGACAGCTACACCCGGGTTTTTCTGGTCGGCCTCGTCAATACGCTGGTGGTGTCGGTGATCGGCATCTT
CTTCGCGACGCTGCTCGGCTTTCTCGTGGCACTCGGCCGGCTGTCGCCGAACTGGCTGATCGCGCGGATCGCCGGCGGTT
ATGTCGAGCTGATCCGCAACCTGCCGCTGCTGTTCCAGATCCTGTTCTGGTATCTCGCCGTGCTCGGCGCGCTGCCGGGC
CCGCGCCAGAGTGTGTCGGTGTTCGACAGCTTCTTTCTGTCGAACCGCGGCATCGTCGTGCCGCGTCCGGTCGGCGAAGC
CGGGCTCGACGGTTTTCTCGTGGCGCTGCTGATCGCCGTGATCGCGGCGATCGTGCTGCCGATCTATGCGCGGCGGCGAT
TGTTCGACACCGGCAAGCCGATGAAGGTCTGGCCGTGGAGCGTCGGCCTGCTGATCGGCCTGCCGCTGATCGCGGTGCTG
ATCTTCGGCCGGCCGTTCGGCTTTGAAATCCCGGCGCTGAAAGGTTTCAATTTCGCCGGCGGCGCGCGGATCGCGCCGGA
GTTCGTGGCGCTGACGCTGGCGCTCGCGACCTACACGGCGGGGTTCATCGCCGAGATCGTCCGCGCCGGCATCCTGTCGG
TGCACAAGGGCCAGATGGAAGCCGGCGCGTCGCTCGGCCTGTCGCGCGGTGCGACGTTGCGGCTCGTCGTGATCCCGCAG
GCGATGCGGGTGATCCTGCCGCCACTGACCAACCAATATCTCAACCTGACCAAGAATTCGTCGCTGGCGGTGGCGATCGG
CTATCCCGATCTGTTCTCGGTGTTCGCCGGCACCACGCTGAGCCAGACCGGGCAGGCGATCGAGGTGATCGCGATCACCA
TGGGCGTGTATCTGCTGATCTCGCTGATCACCAGCGCGCTGATGAGCCTGTACAGTTGGCGGATCAACCGGAGCATGGGC
GCATGA

Upstream 100 bases:

>100_bases
GCCGGCTCCAAGCTCGAAATCGCCCGCGGCCTGAACAAGCCCTGGAACAAGGGCGGCATCATGTACGCGCCGCCGATCCG
CTGACGCGCGGATCACGGCC

Downstream 100 bases:

>100_bases
GCGAACTCGGTTCGATCACGCCGGCCTTCGTGCGCGCCGAGCTGGTGCCCGAGCGCGCCGCGCCGGTGAAGACCACCGGC
TTCATCGGCGTGATGCGGGG

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MAIDARPPPSQFGARLRRALGGRSGWKGLIAQLLFVAVLCWIGYAIVDNARDNLTNQRIASGFGFMSQTAGFGVSQTLIP
YAESDSYTRVFLVGLVNTLVVSVIGIFFATLLGFLVALGRLSPNWLIARIAGGYVELIRNLPLLFQILFWYLAVLGALPG
PRQSVSVFDSFFLSNRGIVVPRPVGEAGLDGFLVALLIAVIAAIVLPIYARRRLFDTGKPMKVWPWSVGLLIGLPLIAVL
IFGRPFGFEIPALKGFNFAGGARIAPEFVALTLALATYTAGFIAEIVRAGILSVHKGQMEAGASLGLSRGATLRLVVIPQ
AMRVILPPLTNQYLNLTKNSSLAVAIGYPDLFSVFAGTTLSQTGQAIEVIAITMGVYLLISLITSALMSLYSWRINRSMG
A

Sequences:

>Translated_401_residues
MAIDARPPPSQFGARLRRALGGRSGWKGLIAQLLFVAVLCWIGYAIVDNARDNLTNQRIASGFGFMSQTAGFGVSQTLIP
YAESDSYTRVFLVGLVNTLVVSVIGIFFATLLGFLVALGRLSPNWLIARIAGGYVELIRNLPLLFQILFWYLAVLGALPG
PRQSVSVFDSFFLSNRGIVVPRPVGEAGLDGFLVALLIAVIAAIVLPIYARRRLFDTGKPMKVWPWSVGLLIGLPLIAVL
IFGRPFGFEIPALKGFNFAGGARIAPEFVALTLALATYTAGFIAEIVRAGILSVHKGQMEAGASLGLSRGATLRLVVIPQ
AMRVILPPLTNQYLNLTKNSSLAVAIGYPDLFSVFAGTTLSQTGQAIEVIAITMGVYLLISLITSALMSLYSWRINRSMG
A
>Mature_400_residues
AIDARPPPSQFGARLRRALGGRSGWKGLIAQLLFVAVLCWIGYAIVDNARDNLTNQRIASGFGFMSQTAGFGVSQTLIPY
AESDSYTRVFLVGLVNTLVVSVIGIFFATLLGFLVALGRLSPNWLIARIAGGYVELIRNLPLLFQILFWYLAVLGALPGP
RQSVSVFDSFFLSNRGIVVPRPVGEAGLDGFLVALLIAVIAAIVLPIYARRRLFDTGKPMKVWPWSVGLLIGLPLIAVLI
FGRPFGFEIPALKGFNFAGGARIAPEFVALTLALATYTAGFIAEIVRAGILSVHKGQMEAGASLGLSRGATLRLVVIPQA
MRVILPPLTNQYLNLTKNSSLAVAIGYPDLFSVFAGTTLSQTGQAIEVIAITMGVYLLISLITSALMSLYSWRINRSMGA

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=348, Percent_Identity=54.5977011494253, Blast_Score=373, Evalue=1e-104,
Organism=Escherichia coli, GI1788226, Length=186, Percent_Identity=31.7204301075269, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787030, Length=137, Percent_Identity=37.2262773722628, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786874, Length=123, Percent_Identity=36.5853658536585, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786873, Length=121, Percent_Identity=33.0578512396694, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082239, Length=84, Percent_Identity=39.2857142857143, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43063; Mature: 42932

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIDARPPPSQFGARLRRALGGRSGWKGLIAQLLFVAVLCWIGYAIVDNARDNLTNQRIA
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
SGFGFMSQTAGFGVSQTLIPYAESDSYTRVFLVGLVNTLVVSVIGIFFATLLGFLVALGR
HHCCHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSPNWLIARIAGGYVELIRNLPLLFQILFWYLAVLGALPGPRQSVSVFDSFFLSNRGIVV
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEE
PRPVGEAGLDGFLVALLIAVIAAIVLPIYARRRLFDTGKPMKVWPWSVGLLIGLPLIAVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHH
IFGRPFGFEIPALKGFNFAGGARIAPEFVALTLALATYTAGFIAEIVRAGILSVHKGQME
HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AGASLGLSRGATLRLVVIPQAMRVILPPLTNQYLNLTKNSSLAVAIGYPDLFSVFAGTTL
HCHHCCCCCCCEEEEEEEHHHHHHHCCCHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCH
SQTGQAIEVIAITMGVYLLISLITSALMSLYSWRINRSMGA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]