| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yaeT [H]
Identifier: 86749937
GI number: 86749937
Start: 3212823
End: 3215360
Strand: Reverse
Name: yaeT [H]
Synonym: RPB_2820
Alternate gene names: 86749937
Gene position: 3215360-3212823 (Counterclockwise)
Preceding gene: 86749938
Following gene: 86749936
Centisome position: 60.31
GC content: 63.24
Gene sequence:
>2538_bases ATGAATGCTGGAATGCGATTGTTGCGGGGGGGCCTTCTTGCTGCCACCCTGGTGTTTTTCGCCGTACCGGTCGCCACGAC GGCGACCGCTGTATTGACGGCGTCGCCTGCGGCCGCGCAGTCTGCCTCTTCGATTCAGGTCGAGGGCAACCGCCGGGTCG AGGCCGACACCATTCGCTCCTATTTCAAGCCAGGCCCGAGCGGCCGGCTCGACCAGGGCAGCATCGACGACGGCCTCAAG GCGCTGATCGAGACGGGGCTGTTCCAGGACGTCCGGATCAATCAGGGTGGCGGCGGTCGCCTCGTCGTCAGCGTCGTCGA AAACCCGGTGATCGGCCGGCTCGCTTTCGAGGGCAACAAGAAGATCAAGGACGAGCAGCTTTCGGCGGAAATCCAGTCGA AGCCGCGTGGCACGCTGTCGCGTCCGATGATCCAGTCCGACGCGCTGCGGATCGCTGAAATCTACCGCCGGTCGGGCCGT TACGACGTTCGCGTCGATCCGCAGATCATCGAACAGCCGAACAACCGCGTCGATCTGGTGTTCGTCGTCAACGAAGGCGA CAAGACCGGCGTCAAGTCGATCGAATTCATCGGCAACAAGGCGTTCTCGTCCTATCGGCTGAAGGACGTCATCAAGACCC GCGAATCCAACCTGCTGAGCTTCCTCGGCTCGGGCGACGTCTACGATCCGGATCGGGTCGAGGCGGACCGCGATCTGATC CGGCGCTTTTATCTGAAGAACGGCTATGCCGACGTTCAGGTGGTGGCCGCGCTGACCGAATACGATCCGGAGCGCAAGGG CTTCCTCGTCTCCTTCAAGATCGAGGAAGGTCAGCAATATCGCGTCGGCTCGGTGAGCTTCGAATCGACGATTCCGAATT TCGACGCCAATTCCCTGAGCAGCTATTCGCGGGTGAATGTCGGCTCGCTGTACAACGCCGAGGCGCTCGAGAAGTCCGTC GAGGAAATGCAGATCGAGATGTCGCGGCGCGGCTATGCATTCGCGACGGTGCGTCCGCGTGGCGATCGTAATTTCGAATC CCATACCGTCTCGATCGTGTTCTCGATCGAGGAGGGCGCTCGGGTCTACATCGAGCGGATCAACGTCGTCGGCAACACCC GGACCCGCGACTACGTCATCCGGCGCGAGTTCGATATCGCGGAAGGCGATGCCTACAACCGCGCGCTGGTCGACCGGGCC GAGCGCCGGCTGAAGAACCTCGACTTCTTCAAGTCCGTGAAGATCTCGACCGAACCCGGCTCGTCGAGCGACCGCGTCAT CCTGGTGGTCAATCTCGAAGAGAAATCGACCGGCGACTTCTCGGTCTCCGGCGGCTATTCGACCAGCAACGGCGCGATGG GCGAAGTCAGCGTCTCGGAGCGCAACTTCCTCGGCCGCGGCCTGTTCGCCAAGGCGACCGTGCAATACGGCCAGTATGCG CGCGGCTACTCGCTGTCGCTCGTCGAGCCCTATCTGCTCGACTACCGCGTCGCGCTCGGCCTCGACCTGTATCAGCGCGA GCAGCTCGCCAACAGCTACATCTCGTACGGCACCAAGACGCTCGGCATCAGCCCGCGGCTCGGCTTCGCCCTGCGCGAAG ACCTGACCCTGCAGCTGCGCTATTCGCTGTACCGGCAGGAAATCACGCTGCCGTCGTACCTGAACAATTGTAACAACAAT CTCGGCTCGGCGAACTACTTCCCGACGCCTCAGTTCATCGCGGCCGGCAATCCGAACAACACCGGCTACGGCGTGCTCGG CTGCTACGGCGACGGCGAAGCCTCGCTTCCGGTCCGCATCGGCCTGTCCAACGGCGCCTACTGGACCTCCTCGGTCGGCT ACACCCTGACCTACAACACGCTGGACAACACCCGGAACCCGACCAACGGTCTGCTGGTCGACTTCCGTCAGGACTTCGCC GGCGTCGGCGGCGACGTGAAGTTCCTGAAGTCGGCGTTCGACGCCAAGTACTACACCCCGCTGGTGTCGGACATCGTCGG CATCGTCCACCTGCAGGCCGGCAATCTCAGCACCTATGGCGGCAACCAGCTGCGCATGCTCGACCACTTCCAGATGGGTC CGAACCTGGTCCGCGGCTTCGCGCCGAACGGTATCGGTCCGCGCGACATCGGCCAGTACGCCTTCTACGGCTACGGCGGC GACGCGCTCGGCGGCACCAACTACTGGGGCGCATCGGTCGAGTTGCAGATGCCGTTCTGGTTCCTGCCGAAGGAAGTCGG GCTCAAGGGCGCCGTCTATGCCGACGCCGGCTCGCTGTTCGACTACAAGGGCCCGACGTCGTGGACGCTCACCAACGAAG TCAACGCGCCCGGTTGTACGCCGGCGAGCCAGACCTCGATCGGGACCTGCGCCGGCCTGAATTACGACGACACCAATCTG GTCCGCACCTCGGTGGGTGTCGGCCTGATCTGGGCCTCGCCGTTCGGTCCGCTGCGGTTCGACTACGCTGTCCCGATCAC CAAGGGTAAGTACGACCGCGTCCAGGAATTCAAATTCGGCGGCGGGACTTCGTTCTAA
Upstream 100 bases:
>100_bases TTTGCCGGCTCGGCAAAATTGTCTACAAGCAAGGCAAGTTGGGGATTCTGCCGGCACGGGGGCTGCGGGTCGGCACTGGA ATGACAAGGGCGCGTTGCGC
Downstream 100 bases:
>100_bases GTCCCGCGGTCCGGACTGCGACCGCAGGATGACCTCGACTTTGTTCTTCAAACCGCGTCCTTCGTCGACGTTGGCTGAAA TCGCCGCGTTGACGAAGGCT
Product: surface antigen (D15)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MNAGMRLLRGGLLAATLVFFAVPVATTATAVLTASPAAAQSASSIQVEGNRRVEADTIRSYFKPGPSGRLDQGSIDDGLK ALIETGLFQDVRINQGGGGRLVVSVVENPVIGRLAFEGNKKIKDEQLSAEIQSKPRGTLSRPMIQSDALRIAEIYRRSGR YDVRVDPQIIEQPNNRVDLVFVVNEGDKTGVKSIEFIGNKAFSSYRLKDVIKTRESNLLSFLGSGDVYDPDRVEADRDLI RRFYLKNGYADVQVVAALTEYDPERKGFLVSFKIEEGQQYRVGSVSFESTIPNFDANSLSSYSRVNVGSLYNAEALEKSV EEMQIEMSRRGYAFATVRPRGDRNFESHTVSIVFSIEEGARVYIERINVVGNTRTRDYVIRREFDIAEGDAYNRALVDRA ERRLKNLDFFKSVKISTEPGSSSDRVILVVNLEEKSTGDFSVSGGYSTSNGAMGEVSVSERNFLGRGLFAKATVQYGQYA RGYSLSLVEPYLLDYRVALGLDLYQREQLANSYISYGTKTLGISPRLGFALREDLTLQLRYSLYRQEITLPSYLNNCNNN LGSANYFPTPQFIAAGNPNNTGYGVLGCYGDGEASLPVRIGLSNGAYWTSSVGYTLTYNTLDNTRNPTNGLLVDFRQDFA GVGGDVKFLKSAFDAKYYTPLVSDIVGIVHLQAGNLSTYGGNQLRMLDHFQMGPNLVRGFAPNGIGPRDIGQYAFYGYGG DALGGTNYWGASVELQMPFWFLPKEVGLKGAVYADAGSLFDYKGPTSWTLTNEVNAPGCTPASQTSIGTCAGLNYDDTNL VRTSVGVGLIWASPFGPLRFDYAVPITKGKYDRVQEFKFGGGTSF
Sequences:
>Translated_845_residues MNAGMRLLRGGLLAATLVFFAVPVATTATAVLTASPAAAQSASSIQVEGNRRVEADTIRSYFKPGPSGRLDQGSIDDGLK ALIETGLFQDVRINQGGGGRLVVSVVENPVIGRLAFEGNKKIKDEQLSAEIQSKPRGTLSRPMIQSDALRIAEIYRRSGR YDVRVDPQIIEQPNNRVDLVFVVNEGDKTGVKSIEFIGNKAFSSYRLKDVIKTRESNLLSFLGSGDVYDPDRVEADRDLI RRFYLKNGYADVQVVAALTEYDPERKGFLVSFKIEEGQQYRVGSVSFESTIPNFDANSLSSYSRVNVGSLYNAEALEKSV EEMQIEMSRRGYAFATVRPRGDRNFESHTVSIVFSIEEGARVYIERINVVGNTRTRDYVIRREFDIAEGDAYNRALVDRA ERRLKNLDFFKSVKISTEPGSSSDRVILVVNLEEKSTGDFSVSGGYSTSNGAMGEVSVSERNFLGRGLFAKATVQYGQYA RGYSLSLVEPYLLDYRVALGLDLYQREQLANSYISYGTKTLGISPRLGFALREDLTLQLRYSLYRQEITLPSYLNNCNNN LGSANYFPTPQFIAAGNPNNTGYGVLGCYGDGEASLPVRIGLSNGAYWTSSVGYTLTYNTLDNTRNPTNGLLVDFRQDFA GVGGDVKFLKSAFDAKYYTPLVSDIVGIVHLQAGNLSTYGGNQLRMLDHFQMGPNLVRGFAPNGIGPRDIGQYAFYGYGG DALGGTNYWGASVELQMPFWFLPKEVGLKGAVYADAGSLFDYKGPTSWTLTNEVNAPGCTPASQTSIGTCAGLNYDDTNL VRTSVGVGLIWASPFGPLRFDYAVPITKGKYDRVQEFKFGGGTSF >Mature_845_residues MNAGMRLLRGGLLAATLVFFAVPVATTATAVLTASPAAAQSASSIQVEGNRRVEADTIRSYFKPGPSGRLDQGSIDDGLK ALIETGLFQDVRINQGGGGRLVVSVVENPVIGRLAFEGNKKIKDEQLSAEIQSKPRGTLSRPMIQSDALRIAEIYRRSGR YDVRVDPQIIEQPNNRVDLVFVVNEGDKTGVKSIEFIGNKAFSSYRLKDVIKTRESNLLSFLGSGDVYDPDRVEADRDLI RRFYLKNGYADVQVVAALTEYDPERKGFLVSFKIEEGQQYRVGSVSFESTIPNFDANSLSSYSRVNVGSLYNAEALEKSV EEMQIEMSRRGYAFATVRPRGDRNFESHTVSIVFSIEEGARVYIERINVVGNTRTRDYVIRREFDIAEGDAYNRALVDRA ERRLKNLDFFKSVKISTEPGSSSDRVILVVNLEEKSTGDFSVSGGYSTSNGAMGEVSVSERNFLGRGLFAKATVQYGQYA RGYSLSLVEPYLLDYRVALGLDLYQREQLANSYISYGTKTLGISPRLGFALREDLTLQLRYSLYRQEITLPSYLNNCNNN LGSANYFPTPQFIAAGNPNNTGYGVLGCYGDGEASLPVRIGLSNGAYWTSSVGYTLTYNTLDNTRNPTNGLLVDFRQDFA GVGGDVKFLKSAFDAKYYTPLVSDIVGIVHLQAGNLSTYGGNQLRMLDHFQMGPNLVRGFAPNGIGPRDIGQYAFYGYGG DALGGTNYWGASVELQMPFWFLPKEVGLKGAVYADAGSLFDYKGPTSWTLTNEVNAPGCTPASQTSIGTCAGLNYDDTNL VRTSVGVGLIWASPFGPLRFDYAVPITKGKYDRVQEFKFGGGTSF
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Homo sapiens, GI225543166, Length=513, Percent_Identity=22.4171539961014, Blast_Score=75, Evalue=4e-13, Organism=Escherichia coli, GI1786374, Length=866, Percent_Identity=26.2124711316397, Blast_Score=259, Evalue=5e-70,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 92771; Mature: 92771
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAGMRLLRGGLLAATLVFFAVPVATTATAVLTASPAAAQSASSIQVEGNRRVEADTIRS CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHCCCCEEEECCCCEECHHHHHH YFKPGPSGRLDQGSIDDGLKALIETGLFQDVRINQGGGGRLVVSVVENPVIGRLAFEGNK HHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEEECCCC KIKDEQLSAEIQSKPRGTLSRPMIQSDALRIAEIYRRSGRYDVRVDPQIIEQPNNRVDLV CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEEEE FVVNEGDKTGVKSIEFIGNKAFSSYRLKDVIKTRESNLLSFLGSGDVYDPDRVEADRDLI EEECCCCCCCCHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RRFYLKNGYADVQVVAALTEYDPERKGFLVSFKIEEGQQYRVGSVSFESTIPNFDANSLS HHHHHCCCCCCEEEEEEHHHCCCCCCCEEEEEEECCCCEEEECEEEHHCCCCCCCCCCCC SYSRVNVGSLYNAEALEKSVEEMQIEMSRRGYAFATVRPRGDRNFESHTVSIVFSIEEGA CCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEECCCC RVYIERINVVGNTRTRDYVIRREFDIAEGDAYNRALVDRAERRLKNLDFFKSVKISTEPG EEEEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHEEEEECCCC SSSDRVILVVNLEEKSTGDFSVSGGYSTSNGAMGEVSVSERNFLGRGLFAKATVQYGQYA CCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCC RGYSLSLVEPYLLDYRVALGLDLYQREQLANSYISYGTKTLGISPRLGFALREDLTLQLR CCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCCEEEEE YSLYRQEITLPSYLNNCNNNLGSANYFPTPQFIAAGNPNNTGYGVLGCYGDGEASLPVRI HHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCEEEE GLSNGAYWTSSVGYTLTYNTLDNTRNPTNGLLVDFRQDFAGVGGDVKFLKSAFDAKYYTP ECCCCCEEECCCCEEEEEECCCCCCCCCCCEEEEECHHHCCCCCCHHHHHHHHCCHHHHH LVSDIVGIVHLQAGNLSTYGGNQLRMLDHFQMGPNLVRGFAPNGIGPRDIGQYAFYGYGG HHHHHHEEEEEECCCEECCCCCEEEEEHHHHCCCHHHHCCCCCCCCHHHHCCEEEEECCC DALGGTNYWGASVELQMPFWFLPKEVGLKGAVYADAGSLFDYKGPTSWTLTNEVNAPGCT CCCCCCCCCCCEEEEECCEEECCHHHCCCEEEEECCCCEEECCCCCCEEEECCCCCCCCC PASQTSIGTCAGLNYDDTNLVRTSVGVGLIWASPFGPLRFDYAVPITKGKYDRVQEFKFG CCCCCCCCEEECCCCCCCCEEEECCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHEECC GGTSF CCCCC >Mature Secondary Structure MNAGMRLLRGGLLAATLVFFAVPVATTATAVLTASPAAAQSASSIQVEGNRRVEADTIRS CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHCCCCEEEECCCCEECHHHHHH YFKPGPSGRLDQGSIDDGLKALIETGLFQDVRINQGGGGRLVVSVVENPVIGRLAFEGNK HHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEEECCCC KIKDEQLSAEIQSKPRGTLSRPMIQSDALRIAEIYRRSGRYDVRVDPQIIEQPNNRVDLV CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEEEE FVVNEGDKTGVKSIEFIGNKAFSSYRLKDVIKTRESNLLSFLGSGDVYDPDRVEADRDLI EEECCCCCCCCHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RRFYLKNGYADVQVVAALTEYDPERKGFLVSFKIEEGQQYRVGSVSFESTIPNFDANSLS HHHHHCCCCCCEEEEEEHHHCCCCCCCEEEEEEECCCCEEEECEEEHHCCCCCCCCCCCC SYSRVNVGSLYNAEALEKSVEEMQIEMSRRGYAFATVRPRGDRNFESHTVSIVFSIEEGA CCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEECCCC RVYIERINVVGNTRTRDYVIRREFDIAEGDAYNRALVDRAERRLKNLDFFKSVKISTEPG EEEEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHEEEEECCCC SSSDRVILVVNLEEKSTGDFSVSGGYSTSNGAMGEVSVSERNFLGRGLFAKATVQYGQYA CCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCC RGYSLSLVEPYLLDYRVALGLDLYQREQLANSYISYGTKTLGISPRLGFALREDLTLQLR CCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCCEEEEE YSLYRQEITLPSYLNNCNNNLGSANYFPTPQFIAAGNPNNTGYGVLGCYGDGEASLPVRI HHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCEEEE GLSNGAYWTSSVGYTLTYNTLDNTRNPTNGLLVDFRQDFAGVGGDVKFLKSAFDAKYYTP ECCCCCEEECCCCEEEEEECCCCCCCCCCCEEEEECHHHCCCCCCHHHHHHHHCCHHHHH LVSDIVGIVHLQAGNLSTYGGNQLRMLDHFQMGPNLVRGFAPNGIGPRDIGQYAFYGYGG HHHHHHEEEEEECCCEECCCCCEEEEEHHHHCCCHHHHCCCCCCCCHHHHCCEEEEECCC DALGGTNYWGASVELQMPFWFLPKEVGLKGAVYADAGSLFDYKGPTSWTLTNEVNAPGCT CCCCCCCCCCCEEEEECCEEECCHHHCCCEEEEECCCCEEECCCCCCEEEECCCCCCCCC PASQTSIGTCAGLNYDDTNLVRTSVGVGLIWASPFGPLRFDYAVPITKGKYDRVQEFKFG CCCCCCCCEEECCCCCCCCEEEECCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHEECC GGTSF CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA