| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is comEC [H]
Identifier: 86749927
GI number: 86749927
Start: 3200390
End: 3202684
Strand: Reverse
Name: comEC [H]
Synonym: RPB_2810
Alternate gene names: 86749927
Gene position: 3202684-3200390 (Counterclockwise)
Preceding gene: 86749928
Following gene: 86749924
Centisome position: 60.07
GC content: 71.2
Gene sequence:
>2295_bases GTGGAGCGGGGCGATCGAGCCAGAGCACGGACCAAGGCACGGACCTGGCCGACGCGCGTCGCGTCGCCGGCCGGTGTGCT GGCGCCGTGGGGTGCATCCTTCTGGCCGGCGTTGGTCGAGACACTCCGTCAATGGGTCCGCGCCGAAGCCGGGCCGGGCC GGCTGCTGCCGTTCGTGCCGATCGCGTTCGGCGGCGGGATCGCGCTGTATTTCGCGGCCGACCACGAGCCGGTAGCCTGG GTGGCCTGTCTCGCTGCGGTGGCGTTCGGCGTGGCTGGGTTTCTGTTGCGGCGAAATCGGGCATTTCCGCTCGCGGTGCT GATCACCGCCTTCGCCGCCGGATTCGCCACCGTCGCATTGAAAGCGCAGCGGATCGCGCATCCGGTGCTGGCCAAGCCGG TGCAGGCGGCGACGCTCAAGGGGTTCGTCGAGGCCCGCGAGGAGCGCGAGCGCACCGACCGCTTCGTGCTGCGCGTCACC GAGATGGACACGGCTGGCCGCGCGCCCGCCTTGCATCGCGTGCGGGTGTCGGTGCGCAAGGGCGCTGCGCCTTCTGTCGG CAGCTTCGTGGCGTTGAAGGCGCGGCTGCTGCCGCCGCTGTCGCCGCTGCGGCCGGGCGCTTACGATTTCGGCCGCGATC TGTATTTCCAGGGCATCGCCGCCTCGGGCTTTGTGCTCGGCGCGATCACCACGCAGGACCCGCCGGCCGATGGCGGCTGG CGGTTGCGCTATGCGGCGATCATGCAGGGGTTGCGCGATGCGATCGACGCGCGGATCCGTCTCGCGCTCGACGGCGACCA GCGCGCGATCGCCACCGCGCTGATCACCGGCCGACGCGACGCGATCTCGACGCCGGTCAACGACGCGATGTTCGTCTCCG GGCTCGGCCACGTGCTGTCGATCTCCGGCTATCACATGGCGGTGGTGGCCGGGGTGGTGTTCTTTGCGGTGCGCGCGGCT CTGGCGCTGATCCCGGCGCTGACGGTGACGTTTCCGATCAAGAAGGTCGCGGCTGCCGCGGCGCTCGCCGCCGCTGCGTT CTATCTGCTGCTGTCCGGCGCCGAAGTCGCGACCCAGCGCTCGTTCCTGATGACGGCCGTGGTACTGGTGGCGGTGATGG TCGATCGCCGCGCCATCACGTTTCGCACGTTGGCGATCGCCGCTTTGGTGGTGCTGCTGATCGCGCCGGAAGCGCTGGTG CATCCGAGCTTCCAGATGTCGTTCGCGGCGACGCTGGGGTTGGTCGCATTGGTGCAGATCGGCATGCCGGCGCTGTTCGC GACAGCAGACAGTTCGACGACGGCGCGCGCGGCGCTGTGGGGCGGCCGCGAGATCGCGATGCTGGCGCTGGCGTCGCTGG TCGCGGGGCTCGCGACCACGCCCTATGCGGCCTATCACTTCCACCGCGTCACGCCCTATGGGGTGATCGCCAATCTGCTG GCGATGCCCGTCGTGTCGGTCGTGGTGATGCCGGCGGGCCTGCTCGGGCTGGCGGCAATGCCGTTCGGCCTCGACGGGGT GTTCTGGCGTATCATGGAGATCGGCATCGACTGGATGATCGTGGTGGCGCTGTGGGTGGCGGCGTTGCCGGGCGCAATCG GGCGGATCGCGGCGTTCGGCACCGGGCCGCTGCTGCTGGCGTCGCTCGGCATCGTCCTGCTCGGGCTGTTGCGCACGCCG CTGCGCTATGGCGGGCTGGCATTGCTGGCGTTTGCAACCGGCTGGGCGCTGCTGACGCCGCAACCGGACATCCTGATCGC CGGCGACGGCCGGCAGGTCGCGCTGCGCGGGCCCGATGGCCGGCTGCGGCTGATGCAGAGCGGCGGCGACAGTTTCAGGG TCAAGCAGTGGCTGGCTGCCGACGCCGACCCTCGTGCGGTCGATGCGGCCTCGCTGCGCGAGGGGGTGTCGTGCGACGCC GATGGCTGCGTCGCGGCGCTGGCTGATGGCGGGTTGGTGGCGCTGTCGTTCCGCGCCGATGGCATCGGTGATGATTGCGC GCGCGCAAAATTGGTCATAGCGCTGGCGCAGCCGCCGCCGGACTGCGCGGCGCGTCTGATCAGCACGGAGATGCTCGCGG GCAGCGCCGCGCTGGCGCTGCGGCGACATCCAGCCGGGGACGGCGAATTCGTGACCGAGGCGGTTCGGCCGATAGCGCGC GACCGGCCGTGGTTGCCCGCGCCGGCCGTTGCCGCCGGGGATCCGCCGGGCGTCGCGCCGCCGCAGCGGGCGGGTCCACG TCCCGCACCGGTCGATGCCACGCCGGCGCCGTTGGATCAGCACGACGAGGACTGA
Upstream 100 bases:
>100_bases AGGAAGTCGGCGGTAAAAGCTGACGCTTCCGCCGGCGATTGTTGCCGGCGATGCTGATCTGCTCCAGTCTTGGCGCCGCG CTGTTTGAGGGGCGGGCGCC
Downstream 100 bases:
>100_bases GCCCGCGGCGTGACGGCGCGTGGCTCAGTAAGGCGCGTGGCTCAGTATTTGCGATACAGACCGATCAGCTTGCCCTGGAT CCGCACCCGGTTGGGCGGCA
Product: ComEC/Rec2-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MERGDRARARTKARTWPTRVASPAGVLAPWGASFWPALVETLRQWVRAEAGPGRLLPFVPIAFGGGIALYFAADHEPVAW VACLAAVAFGVAGFLLRRNRAFPLAVLITAFAAGFATVALKAQRIAHPVLAKPVQAATLKGFVEAREERERTDRFVLRVT EMDTAGRAPALHRVRVSVRKGAAPSVGSFVALKARLLPPLSPLRPGAYDFGRDLYFQGIAASGFVLGAITTQDPPADGGW RLRYAAIMQGLRDAIDARIRLALDGDQRAIATALITGRRDAISTPVNDAMFVSGLGHVLSISGYHMAVVAGVVFFAVRAA LALIPALTVTFPIKKVAAAAALAAAAFYLLLSGAEVATQRSFLMTAVVLVAVMVDRRAITFRTLAIAALVVLLIAPEALV HPSFQMSFAATLGLVALVQIGMPALFATADSSTTARAALWGGREIAMLALASLVAGLATTPYAAYHFHRVTPYGVIANLL AMPVVSVVVMPAGLLGLAAMPFGLDGVFWRIMEIGIDWMIVVALWVAALPGAIGRIAAFGTGPLLLASLGIVLLGLLRTP LRYGGLALLAFATGWALLTPQPDILIAGDGRQVALRGPDGRLRLMQSGGDSFRVKQWLAADADPRAVDAASLREGVSCDA DGCVAALADGGLVALSFRADGIGDDCARAKLVIALAQPPPDCAARLISTEMLAGSAALALRRHPAGDGEFVTEAVRPIAR DRPWLPAPAVAAGDPPGVAPPQRAGPRPAPVDATPAPLDQHDED
Sequences:
>Translated_764_residues MERGDRARARTKARTWPTRVASPAGVLAPWGASFWPALVETLRQWVRAEAGPGRLLPFVPIAFGGGIALYFAADHEPVAW VACLAAVAFGVAGFLLRRNRAFPLAVLITAFAAGFATVALKAQRIAHPVLAKPVQAATLKGFVEAREERERTDRFVLRVT EMDTAGRAPALHRVRVSVRKGAAPSVGSFVALKARLLPPLSPLRPGAYDFGRDLYFQGIAASGFVLGAITTQDPPADGGW RLRYAAIMQGLRDAIDARIRLALDGDQRAIATALITGRRDAISTPVNDAMFVSGLGHVLSISGYHMAVVAGVVFFAVRAA LALIPALTVTFPIKKVAAAAALAAAAFYLLLSGAEVATQRSFLMTAVVLVAVMVDRRAITFRTLAIAALVVLLIAPEALV HPSFQMSFAATLGLVALVQIGMPALFATADSSTTARAALWGGREIAMLALASLVAGLATTPYAAYHFHRVTPYGVIANLL AMPVVSVVVMPAGLLGLAAMPFGLDGVFWRIMEIGIDWMIVVALWVAALPGAIGRIAAFGTGPLLLASLGIVLLGLLRTP LRYGGLALLAFATGWALLTPQPDILIAGDGRQVALRGPDGRLRLMQSGGDSFRVKQWLAADADPRAVDAASLREGVSCDA DGCVAALADGGLVALSFRADGIGDDCARAKLVIALAQPPPDCAARLISTEMLAGSAALALRRHPAGDGEFVTEAVRPIAR DRPWLPAPAVAAGDPPGVAPPQRAGPRPAPVDATPAPLDQHDED >Mature_764_residues MERGDRARARTKARTWPTRVASPAGVLAPWGASFWPALVETLRQWVRAEAGPGRLLPFVPIAFGGGIALYFAADHEPVAW VACLAAVAFGVAGFLLRRNRAFPLAVLITAFAAGFATVALKAQRIAHPVLAKPVQAATLKGFVEAREERERTDRFVLRVT EMDTAGRAPALHRVRVSVRKGAAPSVGSFVALKARLLPPLSPLRPGAYDFGRDLYFQGIAASGFVLGAITTQDPPADGGW RLRYAAIMQGLRDAIDARIRLALDGDQRAIATALITGRRDAISTPVNDAMFVSGLGHVLSISGYHMAVVAGVVFFAVRAA LALIPALTVTFPIKKVAAAAALAAAAFYLLLSGAEVATQRSFLMTAVVLVAVMVDRRAITFRTLAIAALVVLLIAPEALV HPSFQMSFAATLGLVALVQIGMPALFATADSSTTARAALWGGREIAMLALASLVAGLATTPYAAYHFHRVTPYGVIANLL AMPVVSVVVMPAGLLGLAAMPFGLDGVFWRIMEIGIDWMIVVALWVAALPGAIGRIAAFGTGPLLLASLGIVLLGLLRTP LRYGGLALLAFATGWALLTPQPDILIAGDGRQVALRGPDGRLRLMQSGGDSFRVKQWLAADADPRAVDAASLREGVSCDA DGCVAALADGGLVALSFRADGIGDDCARAKLVIALAQPPPDCAARLISTEMLAGSAALALRRHPAGDGEFVTEAVRPIAR DRPWLPAPAVAAGDPPGVAPPQRAGPRPAPVDATPAPLDQHDED
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 79947; Mature: 79947
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERGDRARARTKARTWPTRVASPAGVLAPWGASFWPALVETLRQWVRAEAGPGRLLPFVP CCCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE IAFGGGIALYFAADHEPVAWVACLAAVAFGVAGFLLRRNRAFPLAVLITAFAAGFATVAL EEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH KAQRIAHPVLAKPVQAATLKGFVEAREERERTDRFVLRVTEMDTAGRAPALHRVRVSVRK HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHC GAAPSVGSFVALKARLLPPLSPLRPGAYDFGRDLYFQGIAASGFVLGAITTQDPPADGGW CCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHCCCCCCEEEEEEECCCCCCCCCC RLRYAAIMQGLRDAIDARIRLALDGDQRAIATALITGRRDAISTPVNDAMFVSGLGHVLS CHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCHHCCCCCCHHHHHHCCCHHHE ISGYHMAVVAGVVFFAVRAALALIPALTVTFPIKKVAAAAALAAAAFYLLLSGAEVATQR ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH SFLMTAVVLVAVMVDRRAITFRTLAIAALVVLLIAPEALVHPSFQMSFAATLGLVALVQI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHH GMPALFATADSSTTARAALWGGREIAMLALASLVAGLATTPYAAYHFHRVTPYGVIANLL CCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHEECCCHHHHHHHHH AMPVVSVVVMPAGLLGLAAMPFGLDGVFWRIMEIGIDWMIVVALWVAALPGAIGRIAAFG HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHCC TGPLLLASLGIVLLGLLRTPLRYGGLALLAFATGWALLTPQPDILIAGDGRQVALRGPDG CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCCEEEECCCCEEEEECCCC RLRLMQSGGDSFRVKQWLAADADPRAVDAASLREGVSCDADGCVAALADGGLVALSFRAD CEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHEECCCCEEEEEEECC GIGDDCARAKLVIALAQPPPDCAARLISTEMLAGSAALALRRHPAGDGEFVTEAVRPIAR CCCCHHCCEEEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHC DRPWLPAPAVAAGDPPGVAPPQRAGPRPAPVDATPAPLDQHDED CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MERGDRARARTKARTWPTRVASPAGVLAPWGASFWPALVETLRQWVRAEAGPGRLLPFVP CCCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE IAFGGGIALYFAADHEPVAWVACLAAVAFGVAGFLLRRNRAFPLAVLITAFAAGFATVAL EEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH KAQRIAHPVLAKPVQAATLKGFVEAREERERTDRFVLRVTEMDTAGRAPALHRVRVSVRK HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHC GAAPSVGSFVALKARLLPPLSPLRPGAYDFGRDLYFQGIAASGFVLGAITTQDPPADGGW CCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHCCCCCCEEEEEEECCCCCCCCCC RLRYAAIMQGLRDAIDARIRLALDGDQRAIATALITGRRDAISTPVNDAMFVSGLGHVLS CHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCHHCCCCCCHHHHHHCCCHHHE ISGYHMAVVAGVVFFAVRAALALIPALTVTFPIKKVAAAAALAAAAFYLLLSGAEVATQR ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH SFLMTAVVLVAVMVDRRAITFRTLAIAALVVLLIAPEALVHPSFQMSFAATLGLVALVQI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHH GMPALFATADSSTTARAALWGGREIAMLALASLVAGLATTPYAAYHFHRVTPYGVIANLL CCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHEECCCHHHHHHHHH AMPVVSVVVMPAGLLGLAAMPFGLDGVFWRIMEIGIDWMIVVALWVAALPGAIGRIAAFG HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHCC TGPLLLASLGIVLLGLLRTPLRYGGLALLAFATGWALLTPQPDILIAGDGRQVALRGPDG CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEECCCCCEEEECCCCEEEEECCCC RLRLMQSGGDSFRVKQWLAADADPRAVDAASLREGVSCDADGCVAALADGGLVALSFRAD CEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHEECCCCEEEEEEECC GIGDDCARAKLVIALAQPPPDCAARLISTEMLAGSAALALRRHPAGDGEFVTEAVRPIAR CCCCHHCCEEEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHC DRPWLPAPAVAAGDPPGVAPPQRAGPRPAPVDATPAPLDQHDED CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]