| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is 86749902
Identifier: 86749902
GI number: 86749902
Start: 3175128
End: 3175997
Strand: Reverse
Name: 86749902
Synonym: RPB_2785
Alternate gene names: NA
Gene position: 3175997-3175128 (Counterclockwise)
Preceding gene: 86749903
Following gene: 86749901
Centisome position: 59.57
GC content: 66.32
Gene sequence:
>870_bases ATGCCGTGCGGTCTCGACCATATCGTTCATGCAGTGCGCGACCTCGACGCCGCGGCGGAGGCTTATCAGCGGCTCGGTTT CAGCGTCGGCGCGCGCAACCGCCATCCCTTCGGCACGCACAATCGCATCGTGCAACTCGACGGCTTCTTCGTCGAAATCC TCACTGTCGCCGAACCCGAGAATATCGAACCGCATCGCGCGGACGCGTTTTCGTTCGGCGCTTACCAGCGCGACTATCTG GCGCGGCGCGAAGGCTTCTCGATGCTGCTGCTCGCAAGCCGCGACGCTGAGGCCGACGCGCGCGGCTTCGCCGCGGTCGG GATCGGCGCGGGCGAGATCTTCAGTTTCGGCCGGGAAGGGCAGCGGCCCGACGGCAGCATCGTCAAGCTCGGGTTCACGC TCGCATTCGCACGCGATCCGCTGTCGCCGGACGCGGGCTTTGCGGCGTGCCGGCATCATCATCCGGAGAACTTCTGGAAT CCGTCGTTCCAGATTCACGCCAACGGCGCGCGTGCGGCGGCGGCGGTCGTGATGATTGCCGACAACCCGACTGATCACCA TATCTTCCTCGGCGCCTTCACCGGGGTGCGGGATCTGCACGCGTCGTCGATCGGCGTCATTGCACAGACCGAGCGCGGCG ACATCGACATCGTCGAGCCGGTGTCGTTCCGCGACCAGTACGGCGTCGCCGCCGCGGTGGATGCGGAGGGCGCGCGTTTC GCCGGATTGCGGATTGCCGTGGAGGAGACGGCCGTGGTTGAACGCCTGTTGCAGCAGAACGGGATCGGCGCGACGCGCCA CATCGACCGCCTGGTCGTGCCGGATGTGTGCGGCGCGACGCTGATCTTCGAACAAGGAATGGTCCGTTGA
Upstream 100 bases:
>100_bases CGACGGCCAGATCGTCGACACCATCACCAATCAGCTGCTGCTGCCGACCGCGTTCTCGGCCGTCAGGTAATCGTGCAGCG ACGATGAAAGCCTTGTCCTG
Downstream 100 bases:
>100_bases ACAAAAGCATTGCACCCGCGCCTGTCGTCGCAGCGGGAGACGTCAAATTCGGCAACGCACTGCCGCTATCGGTGATCGCC GGCCCGTGCCAGCTCGAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MPCGLDHIVHAVRDLDAAAEAYQRLGFSVGARNRHPFGTHNRIVQLDGFFVEILTVAEPENIEPHRADAFSFGAYQRDYL ARREGFSMLLLASRDAEADARGFAAVGIGAGEIFSFGREGQRPDGSIVKLGFTLAFARDPLSPDAGFAACRHHHPENFWN PSFQIHANGARAAAAVVMIADNPTDHHIFLGAFTGVRDLHASSIGVIAQTERGDIDIVEPVSFRDQYGVAAAVDAEGARF AGLRIAVEETAVVERLLQQNGIGATRHIDRLVVPDVCGATLIFEQGMVR
Sequences:
>Translated_289_residues MPCGLDHIVHAVRDLDAAAEAYQRLGFSVGARNRHPFGTHNRIVQLDGFFVEILTVAEPENIEPHRADAFSFGAYQRDYL ARREGFSMLLLASRDAEADARGFAAVGIGAGEIFSFGREGQRPDGSIVKLGFTLAFARDPLSPDAGFAACRHHHPENFWN PSFQIHANGARAAAAVVMIADNPTDHHIFLGAFTGVRDLHASSIGVIAQTERGDIDIVEPVSFRDQYGVAAAVDAEGARF AGLRIAVEETAVVERLLQQNGIGATRHIDRLVVPDVCGATLIFEQGMVR >Mature_288_residues PCGLDHIVHAVRDLDAAAEAYQRLGFSVGARNRHPFGTHNRIVQLDGFFVEILTVAEPENIEPHRADAFSFGAYQRDYLA RREGFSMLLLASRDAEADARGFAAVGIGAGEIFSFGREGQRPDGSIVKLGFTLAFARDPLSPDAGFAACRHHHPENFWNP SFQIHANGARAAAAVVMIADNPTDHHIFLGAFTGVRDLHASSIGVIAQTERGDIDIVEPVSFRDQYGVAAAVDAEGARFA GLRIAVEETAVVERLLQQNGIGATRHIDRLVVPDVCGATLIFEQGMVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31296; Mature: 31164
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCGLDHIVHAVRDLDAAAEAYQRLGFSVGARNRHPFGTHNRIVQLDGFFVEILTVAEPE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCC NIEPHRADAFSFGAYQRDYLARREGFSMLLLASRDAEADARGFAAVGIGAGEIFSFGREG CCCCCCCCCEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHCCCCC QRPDGSIVKLGFTLAFARDPLSPDAGFAACRHHHPENFWNPSFQIHANGARAAAAVVMIA CCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEEE DNPTDHHIFLGAFTGVRDLHASSIGVIAQTERGDIDIVEPVSFRDQYGVAAAVDAEGARF CCCCCCEEEEEECCCHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCEE AGLRIAVEETAVVERLLQQNGIGATRHIDRLVVPDVCGATLIFEQGMVR EEEEEEEHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC >Mature Secondary Structure PCGLDHIVHAVRDLDAAAEAYQRLGFSVGARNRHPFGTHNRIVQLDGFFVEILTVAEPE CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCC NIEPHRADAFSFGAYQRDYLARREGFSMLLLASRDAEADARGFAAVGIGAGEIFSFGREG CCCCCCCCCEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHCCCCC QRPDGSIVKLGFTLAFARDPLSPDAGFAACRHHHPENFWNPSFQIHANGARAAAAVVMIA CCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEEEE DNPTDHHIFLGAFTGVRDLHASSIGVIAQTERGDIDIVEPVSFRDQYGVAAAVDAEGARF CCCCCCEEEEEECCCHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCEE AGLRIAVEETAVVERLLQQNGIGATRHIDRLVVPDVCGATLIFEQGMVR EEEEEEEHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA