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The map label for this gene is ssb [H]

Identifier: 86749830

GI number: 86749830

Start: 3097524

End: 3098027

Strand: Reverse

Name: ssb [H]

Synonym: RPB_2713

Alternate gene names: 86749830

Gene position: 3098027-3097524 (Counterclockwise)

Preceding gene: 86749833

Following gene: 86749826

Centisome position: 58.11

GC content: 65.28

Gene sequence:

>504_bases
ATGGCGGGAAGCGTGAACAAGGTGATCCTGATCGGGAATCTCGGCGCTGATCCGGAGATCAAGCGGACGCAGGACGGGCG
ACCGATCGCCAATCTGCGGATCGCGACCTCGGAAAGCTGGCGCGACCGCGCCACCGGCGAGCGCAAGGAAAAAACCGAGT
GGCACCGCGTGGTGATCTTCAGCGAGGGGCTGTGCAAGATCGCCGAACAGTACCTCAAGAAGGGCTCGAAGGTTTACCTC
GAAGGCCAATTGCAGACACGCAAATGGACCGATCAGAGCGGCGCCGAACGGTACAGCACCGAAGTCGTGCTGCAGAACTT
CAACTCGGTTCTGACCATGCTCGATGGCCGCCCCGGCAGCGGTGGTGGCGGCGGCTACGGAGGCGATGATTCGTCGGGCG
GCGATTTCGGCTCGAGCGGCCCGTCCAGCAGCGCGCCGCGCCGGCCGGTGGCGGCGAGCGGCGGCGGCCGCGGCAGCGAC
ATGGACGACGATATTCCGTTCTGA

Upstream 100 bases:

>100_bases
GACAGCGTAAGCGCTACAGGGACAGCGAGGCGTCGGGTGCGTGTTGCCGCATCGGGCCGGGCCTTGCGCGGTGGTTGGTT
TCGAGTCGAAGGAGACGGCG

Downstream 100 bases:

>100_bases
GGTTTCGGCGGGTGGGGACCTGCGCGGCCGTCCGGGCAACCGGGCGGCCGTTGCCGTTTCAGGCTCCGGAGGTGACCAGC
GCGTACCCAAGCAGCACCTG

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKEKTEWHRVVIFSEGLCKIAEQYLKKGSKVYL
EGQLQTRKWTDQSGAERYSTEVVLQNFNSVLTMLDGRPGSGGGGGYGGDDSSGGDFGSSGPSSSAPRRPVAASGGGRGSD
MDDDIPF

Sequences:

>Translated_167_residues
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKEKTEWHRVVIFSEGLCKIAEQYLKKGSKVYL
EGQLQTRKWTDQSGAERYSTEVVLQNFNSVLTMLDGRPGSGGGGGYGGDDSSGGDFGSSGPSSSAPRRPVAASGGGRGSD
MDDDIPF
>Mature_166_residues
AGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKEKTEWHRVVIFSEGLCKIAEQYLKKGSKVYLE
GQLQTRKWTDQSGAERYSTEVVLQNFNSVLTMLDGRPGSGGGGGYGGDDSSGGDFGSSGPSSSAPRRPVAASGGGRGSDM
DDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=112, Percent_Identity=33.9285714285714, Blast_Score=83, Evalue=1e-16,
Organism=Escherichia coli, GI1790494, Length=181, Percent_Identity=50.2762430939227, Blast_Score=158, Evalue=2e-40,
Organism=Drosophila melanogaster, GI85725234, Length=100, Percent_Identity=33, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24647376, Length=100, Percent_Identity=33, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 17827; Mature: 17696

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKEKTEWHRVVIF
CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCEEEEEEE
SEGLCKIAEQYLKKGSKVYLEGQLQTRKWTDQSGAERYSTEVVLQNFNSVLTMLDGRPGS
CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
GGGGGYGGDDSSGGDFGSSGPSSSAPRRPVAASGGGRGSDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSVNKVILIGNLGADPEIKRTQDGRPIANLRIATSESWRDRATGERKEKTEWHRVVIF
CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCEEEEEEE
SEGLCKIAEQYLKKGSKVYLEGQLQTRKWTDQSGAERYSTEVVLQNFNSVLTMLDGRPGS
CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
GGGGGYGGDDSSGGDFGSSGPSSSAPRRPVAASGGGRGSDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]