Click here to switch to the map view.

The map label for this gene is 86749817

Identifier: 86749817

GI number: 86749817

Start: 3085520

End: 3086026

Strand: Reverse

Name: 86749817

Synonym: RPB_2700

Alternate gene names: NA

Gene position: 3086026-3085520 (Counterclockwise)

Preceding gene: 86749819

Following gene: 86749811

Centisome position: 57.88

GC content: 69.82

Gene sequence:

>507_bases
ATGGCAAGACGATCCATTCTCGTTGGGACCGCGATTCTGGTCATGACTTCGGGCACGGCGATGGCGCTCGAACTCGACAC
GCTGTCGATCACCAGCGGCCAATTGGTGATCACCGGCAAGACCAGCAAACCCAATCAGGAGGTCGAAGTCGTCGCGACCG
GCGACAAGGTCAAGAGTTCGTCGTCGCGGCGCTTCCGGTTCTCGCTGTCGTATTTGCCGGAGACCTGCAAGCTCGACCTG
AAGTCGGGCACCGAAACGCTGAAGGACCGGCTGGTCGCCAATTGCGGCCAGCGTGGTCCCAAGGGCGAACCGGGCGCCGC
CGGCGCGATGGGACCGGCCGGACCGGCTGGCCCCGCCGGTCCCGCAGGCCCCGCCGGACCGAAGGGCGACACGGGCGCGG
CCGGTCCGGCCGGTCCCGCGGGTGCTGCCGGCCCGAAGGGGGATGCCGGTCCCGCCGGCGCCGCCGGACCGAAGGGCGAG
CCGGGCGAGGCGGCTCCCAAGAACTGA

Upstream 100 bases:

>100_bases
GTTCGGCTATCCTCGATAGCGGCGGTCGCGGATGAGCCGCGCCGGCCTGGCAACGCAGTTGGCGCTATGCGCCGGTCGAA
CACGCATGGGGGTACGCTTG

Downstream 100 bases:

>100_bases
CACGACGATACGCCGCGCGGCTGATGTGACCGCGCATGAATGCCCGCCGGCGACCATGCAATGTGGCGCCGGCGGCGTCT
TGTGGCGCGATCCCCCGCGC

Product: triple helix repeat-containing collagen

Products: NA

Alternate protein names: Collagen Triple Helix Repeat

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MARRSILVGTAILVMTSGTAMALELDTLSITSGQLVITGKTSKPNQEVEVVATGDKVKSSSSRRFRFSLSYLPETCKLDL
KSGTETLKDRLVANCGQRGPKGEPGAAGAMGPAGPAGPAGPAGPAGPKGDTGAAGPAGPAGAAGPKGDAGPAGAAGPKGE
PGEAAPKN

Sequences:

>Translated_168_residues
MARRSILVGTAILVMTSGTAMALELDTLSITSGQLVITGKTSKPNQEVEVVATGDKVKSSSSRRFRFSLSYLPETCKLDL
KSGTETLKDRLVANCGQRGPKGEPGAAGAMGPAGPAGPAGPAGPAGPKGDTGAAGPAGPAGAAGPKGDAGPAGAAGPKGE
PGEAAPKN
>Mature_167_residues
ARRSILVGTAILVMTSGTAMALELDTLSITSGQLVITGKTSKPNQEVEVVATGDKVKSSSSRRFRFSLSYLPETCKLDLK
SGTETLKDRLVANCGQRGPKGEPGAAGAMGPAGPAGPAGPAGPAGPKGDTGAAGPAGPAGAAGPKGDAGPAGAAGPKGEP
GEAAPKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16304; Mature: 16172

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRSILVGTAILVMTSGTAMALELDTLSITSGQLVITGKTSKPNQEVEVVATGDKVKSS
CCCCCEEHHEEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCC
SSRRFRFSLSYLPETCKLDLKSGTETLKDRLVANCGQRGPKGEPGAAGAMGPAGPAGPAG
CCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PAGPAGPKGDTGAAGPAGPAGAAGPKGDAGPAGAAGPKGEPGEAAPKN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARRSILVGTAILVMTSGTAMALELDTLSITSGQLVITGKTSKPNQEVEVVATGDKVKSS
CCCCEEHHEEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCC
SSRRFRFSLSYLPETCKLDLKSGTETLKDRLVANCGQRGPKGEPGAAGAMGPAGPAGPAG
CCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PAGPAGPKGDTGAAGPAGPAGAAGPKGDAGPAGAAGPKGEPGEAAPKN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA