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The map label for this gene is ycfH [C]

Identifier: 86749799

GI number: 86749799

Start: 3064497

End: 3065294

Strand: Direct

Name: ycfH [C]

Synonym: RPB_2682

Alternate gene names: 86749799

Gene position: 3064497-3065294 (Clockwise)

Preceding gene: 86749798

Following gene: 86749800

Centisome position: 57.48

GC content: 66.92

Gene sequence:

>798_bases
ATGCCGATGCTGGTCGACAGCCACTGCCATCTCGACTTCCCCGACTTTGCCGACGATCTCGCCGGCATCGTCGCCCGCGC
CGAAGCGAGCGGGGTGGGGCGGATGGTGACGATCTCGACCCGGGTGAAGCGGCTGCCGGACCTCTTGGCGATCGCCGAGC
GCTTCCCCAACGTGTACTGCTCGGTCGGCACCCATCCGCATCACGTCGACGAGGAAGACGGCATTAGCGCCGACGAACTG
GTGAAGCTGGCGCAGCATCCCAAGGTGGTGGCGTTCGGCGAGGCCGGGCTCGATTACTTCTACGAGCACGGCTCGCGCGA
CGCGCAGGAGCGCGGCTTCCGCACCCACATCGCCGCCGCGCGCGAGACCGGATTGCCGCTGGTGATCCATACCCGCGAGG
CGGACGAGAATTGCGGCCGCATCCTCGAAAACGAGATGGCCAAGGGCGCGTTTCGCGCGGTGTTGCATTGCTACACCGGC
GGCCGGGACCTCGCGCTGCAGGCCATCGACCTCGGCCTGCTGATCGGCTTCACTGGCATACTGACCTTCAAGAAATCCCA
GGCGCTTCGCGACCTCGCCGCCGAATTGCCGGCCGATCGCGTGCTGGTCGAAACCGACGCGCCCTATCTGGCGCCCGGCA
AATATCGCGGCAAGCGCAATGAGCCGGCTTACGTGGTCGAGACCGCCAAGGTGCTGGCCGAGGTGAGGGGCGTGACGCCC
GACGAGATCGCCCGCCAGACCACGGCGAATTTCTTCAACCTGTTCGGCAAGGTGCCGCCGCCGGACGTCGCCGCATGA

Upstream 100 bases:

>100_bases
CGCGCGACTTCGCGGCGCTGCCGACGCGGATCGTGCCGGGCACGCCACTGCCGGCCCCGGCGCCTATCTTCCCGCGCTAT
GTCGAGCCGGCGACCGCCTG

Downstream 100 bases:

>100_bases
CGCTGATCCTGACCATTCTCGGCTCCGGCTCCTCCGCCGGCGTGCCGCGCCCGGCGCTCGGCTGGGGCGCCGCCGATCCG
AGCAATCCGAAGAACCGCCG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MPMLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVKRLPDLLAIAERFPNVYCSVGTHPHHVDEEDGISADEL
VKLAQHPKVVAFGEAGLDYFYEHGSRDAQERGFRTHIAAARETGLPLVIHTREADENCGRILENEMAKGAFRAVLHCYTG
GRDLALQAIDLGLLIGFTGILTFKKSQALRDLAAELPADRVLVETDAPYLAPGKYRGKRNEPAYVVETAKVLAEVRGVTP
DEIARQTTANFFNLFGKVPPPDVAA

Sequences:

>Translated_265_residues
MPMLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVKRLPDLLAIAERFPNVYCSVGTHPHHVDEEDGISADEL
VKLAQHPKVVAFGEAGLDYFYEHGSRDAQERGFRTHIAAARETGLPLVIHTREADENCGRILENEMAKGAFRAVLHCYTG
GRDLALQAIDLGLLIGFTGILTFKKSQALRDLAAELPADRVLVETDAPYLAPGKYRGKRNEPAYVVETAKVLAEVRGVTP
DEIARQTTANFFNLFGKVPPPDVAA
>Mature_264_residues
PMLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVKRLPDLLAIAERFPNVYCSVGTHPHHVDEEDGISADELV
KLAQHPKVVAFGEAGLDYFYEHGSRDAQERGFRTHIAAARETGLPLVIHTREADENCGRILENEMAKGAFRAVLHCYTGG
RDLALQAIDLGLLIGFTGILTFKKSQALRDLAAELPADRVLVETDAPYLAPGKYRGKRNEPAYVVETAKVLAEVRGVTPD
EIARQTTANFFNLFGKVPPPDVAA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=267, Percent_Identity=26.5917602996255, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=28.7313432835821, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=28.3582089552239, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=28.9855072463768, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=28.0155642023346, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI225903424, Length=250, Percent_Identity=28, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI225903439, Length=238, Percent_Identity=26.890756302521, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=39.84375, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=30.859375, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI48994985, Length=258, Percent_Identity=32.1705426356589, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17559024, Length=276, Percent_Identity=29.7101449275362, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=271, Percent_Identity=26.5682656826568, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=297, Percent_Identity=28.2828282828283, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17543026, Length=295, Percent_Identity=26.4406779661017, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648690, Length=284, Percent_Identity=28.8732394366197, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI221330018, Length=200, Percent_Identity=31, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24586117, Length=200, Percent_Identity=31, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28914; Mature: 28783

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVKRLPDLLAIAERFPNVYC
CCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEE
SVGTHPHHVDEEDGISADELVKLAQHPKVVAFGEAGLDYFYEHGSRDAQERGFRTHIAAA
ECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHCCHHHHHHHH
RETGLPLVIHTREADENCGRILENEMAKGAFRAVLHCYTGGRDLALQAIDLGLLIGFTGI
HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LTFKKSQALRDLAAELPADRVLVETDAPYLAPGKYRGKRNEPAYVVETAKVLAEVRGVTP
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
DEIARQTTANFFNLFGKVPPPDVAA
HHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PMLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVKRLPDLLAIAERFPNVYC
CCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEE
SVGTHPHHVDEEDGISADELVKLAQHPKVVAFGEAGLDYFYEHGSRDAQERGFRTHIAAA
ECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHCCHHHHHHHH
RETGLPLVIHTREADENCGRILENEMAKGAFRAVLHCYTGGRDLALQAIDLGLLIGFTGI
HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LTFKKSQALRDLAAELPADRVLVETDAPYLAPGKYRGKRNEPAYVVETAKVLAEVRGVTP
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
DEIARQTTANFFNLFGKVPPPDVAA
HHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]