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The map label for this gene is ybiH [H]

Identifier: 86749675

GI number: 86749675

Start: 2932864

End: 2933616

Strand: Reverse

Name: ybiH [H]

Synonym: RPB_2557

Alternate gene names: 86749675

Gene position: 2933616-2932864 (Counterclockwise)

Preceding gene: 86749676

Following gene: 86749663

Centisome position: 55.02

GC content: 66.53

Gene sequence:

>753_bases
ATGCTGACGATGATTCCGACGATGATGCCGAACAGACACGCCGCACACGACAGGCCCATGGCACCGCCCGCCAGCGACAC
CCGCGCCCGCATGATCGAGGCGGCGATCGAGGTGTTCGGGTCGGTCGGCTACGACGGCGCCACCACGCGCCAGTTGGCGG
AGCGAGCCGGCGTCAACCAGGCGGCGATCCCCTACCATTTCGGCGGCAAGCGCGAACTCTACCTCGCCGCCGCGCAGGCG
ATCGCCGACTACATGCGCTCCCGCATCGAGCCGCTGATCGACACGCTGCGCACCGCCAGCGTCGATCCGGTCGGCCACAT
CGACGCGGTGGTGATGCGCTTCTTCCAGTTCATCGCCGGCAACGCCGAGCCGGAAGCCTGGACGGTGTTCTTCGTGCGCT
GCGAGCGCGACGCCGACGATGCGTTTCGCATCATCTATTATCAATCCGTCGCGCGCTTTCAGAGCGCCCTGATCGCGGAA
GTCGCCGCCGCGACCGGCCGTTCGCCGAACGACGAGGATCTGAAGATCCGCACCGCGATCGTGCTCGGCGCAATCTCCAA
TTTCCGCACCCTGCGCAACGTCATGCTGAGTTCACTCGGCTGGGACACATTCGATGCCGAGCGGACACGGAAGCTCGAAA
TCGCCGTCCGTCGGCTGGCGCAGGCGGAGTTGTTCGGCATCCGCGCCGAGCATGAACCGATCGCCGAGCATTCGCCCCGC
TCCGCCGGATCGCATCCATCACCCACGGCCTGA

Upstream 100 bases:

>100_bases
CCACAGCCCGTTGCCTGCCACCCTCGCCCAAGCCGGCCGAGCAGCGGTTTGATCCATCTCAACGCCTCATTCATTCGAAT
GAATTAGGTCGGCCCATGAG

Downstream 100 bases:

>100_bases
CCCCAAAAGGAGGCTGCCATCACGAAGCCCGATCTCACCCAAGCCTATCTGGAATGGACCAAGCAGAAACTCGACGAATC
TGCCGCGACGCTCGCCAAGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MLTMIPTMMPNRHAAHDRPMAPPASDTRARMIEAAIEVFGSVGYDGATTRQLAERAGVNQAAIPYHFGGKRELYLAAAQA
IADYMRSRIEPLIDTLRTASVDPVGHIDAVVMRFFQFIAGNAEPEAWTVFFVRCERDADDAFRIIYYQSVARFQSALIAE
VAAATGRSPNDEDLKIRTAIVLGAISNFRTLRNVMLSSLGWDTFDAERTRKLEIAVRRLAQAELFGIRAEHEPIAEHSPR
SAGSHPSPTA

Sequences:

>Translated_250_residues
MLTMIPTMMPNRHAAHDRPMAPPASDTRARMIEAAIEVFGSVGYDGATTRQLAERAGVNQAAIPYHFGGKRELYLAAAQA
IADYMRSRIEPLIDTLRTASVDPVGHIDAVVMRFFQFIAGNAEPEAWTVFFVRCERDADDAFRIIYYQSVARFQSALIAE
VAAATGRSPNDEDLKIRTAIVLGAISNFRTLRNVMLSSLGWDTFDAERTRKLEIAVRRLAQAELFGIRAEHEPIAEHSPR
SAGSHPSPTA
>Mature_250_residues
MLTMIPTMMPNRHAAHDRPMAPPASDTRARMIEAAIEVFGSVGYDGATTRQLAERAGVNQAAIPYHFGGKRELYLAAAQA
IADYMRSRIEPLIDTLRTASVDPVGHIDAVVMRFFQFIAGNAEPEAWTVFFVRCERDADDAFRIIYYQSVARFQSALIAE
VAAATGRSPNDEDLKIRTAIVLGAISNFRTLRNVMLSSLGWDTFDAERTRKLEIAVRRLAQAELFGIRAEHEPIAEHSPR
SAGSHPSPTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=204, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 27629; Mature: 27629

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTMIPTMMPNRHAAHDRPMAPPASDTRARMIEAAIEVFGSVGYDGATTRQLAERAGVNQ
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
AAIPYHFGGKRELYLAAAQAIADYMRSRIEPLIDTLRTASVDPVGHIDAVVMRFFQFIAG
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
NAEPEAWTVFFVRCERDADDAFRIIYYQSVARFQSALIAEVAAATGRSPNDEDLKIRTAI
CCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
VLGAISNFRTLRNVMLSSLGWDTFDAERTRKLEIAVRRLAQAELFGIRAEHEPIAEHSPR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
SAGSHPSPTA
CCCCCCCCCC
>Mature Secondary Structure
MLTMIPTMMPNRHAAHDRPMAPPASDTRARMIEAAIEVFGSVGYDGATTRQLAERAGVNQ
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
AAIPYHFGGKRELYLAAAQAIADYMRSRIEPLIDTLRTASVDPVGHIDAVVMRFFQFIAG
CCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
NAEPEAWTVFFVRCERDADDAFRIIYYQSVARFQSALIAEVAAATGRSPNDEDLKIRTAI
CCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
VLGAISNFRTLRNVMLSSLGWDTFDAERTRKLEIAVRRLAQAELFGIRAEHEPIAEHSPR
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
SAGSHPSPTA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]