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The map label for this gene is exbD [H]

Identifier: 86749341

GI number: 86749341

Start: 2535715

End: 2536119

Strand: Direct

Name: exbD [H]

Synonym: RPB_2221

Alternate gene names: 86749341

Gene position: 2535715-2536119 (Clockwise)

Preceding gene: 86749340

Following gene: 86749342

Centisome position: 47.56

GC content: 59.01

Gene sequence:

>405_bases
ATGCAGGTCCAAGACGACTCCAAGCCGTACGACGACATCAACATCACGCCGATGTTGGACCTCGCCTACGTTCTGCTGGT
GATCTTCATCATCATGACCACGGCCACGGTCCAAGGACAGAAGGTCAATCTGCCGAAGGCTTCCGCGGCGCCGAGTCTGG
CTACGCAGACCACCAAGGCGATCACCGTCGGCAACGACGGAAAGCTCTTTCTCGATACCGTGCCGGTCACGTTGTCGGAA
TTGGAACAGCGCCTCGTGCAGCAGAAGGCTCTCACCCCCGAGTTTCCTGTAGTGCTGCGCGGCGACGCGCAAGCCCAGTA
TCAGAGCGTTATGGATGTCCTCGATCTTCTGGGCCGGATCGGTCTCAGCCAAGTTGGTCTTGCGACCAAGCCGCTGGTGA
AGTGA

Upstream 100 bases:

>100_bases
GTCCAGGTGTTCGTCGACGACGTGGTGACGCGCATCGCCGAACTCTACACCTCAGACCTGCCGGCGCCGCTGCGCCGCGA
TCAGGCGGCGGAGTAAGGAG

Downstream 100 bases:

>100_bases
CGAGGTCATGATGCTCATGTCGTTTCCAATCGCGGCCCGCGCCGCTTCGGCGGCTCAGGACGGCGTTCTGGTGCAGATGC
GCGACGCGTTGCTGCGGTGG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MQVQDDSKPYDDINITPMLDLAYVLLVIFIIMTTATVQGQKVNLPKASAAPSLATQTTKAITVGNDGKLFLDTVPVTLSE
LEQRLVQQKALTPEFPVVLRGDAQAQYQSVMDVLDLLGRIGLSQVGLATKPLVK

Sequences:

>Translated_134_residues
MQVQDDSKPYDDINITPMLDLAYVLLVIFIIMTTATVQGQKVNLPKASAAPSLATQTTKAITVGNDGKLFLDTVPVTLSE
LEQRLVQQKALTPEFPVVLRGDAQAQYQSVMDVLDLLGRIGLSQVGLATKPLVK
>Mature_134_residues
MQVQDDSKPYDDINITPMLDLAYVLLVIFIIMTTATVQGQKVNLPKASAAPSLATQTTKAITVGNDGKLFLDTVPVTLSE
LEQRLVQQKALTPEFPVVLRGDAQAQYQSVMDVLDLLGRIGLSQVGLATKPLVK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=133, Percent_Identity=30.0751879699248, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14509; Mature: 14509

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVQDDSKPYDDINITPMLDLAYVLLVIFIIMTTATVQGQKVNLPKASAAPSLATQTTKA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHCCCEE
ITVGNDGKLFLDTVPVTLSELEQRLVQQKALTPEFPVVLRGDAQAQYQSVMDVLDLLGRI
EEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHC
GLSQVGLATKPLVK
CHHHCCCCCCCCCC
>Mature Secondary Structure
MQVQDDSKPYDDINITPMLDLAYVLLVIFIIMTTATVQGQKVNLPKASAAPSLATQTTKA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHCCCEE
ITVGNDGKLFLDTVPVTLSELEQRLVQQKALTPEFPVVLRGDAQAQYQSVMDVLDLLGRI
EEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHC
GLSQVGLATKPLVK
CHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]