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The map label for this gene is bphB [H]

Identifier: 86749290

GI number: 86749290

Start: 2462599

End: 2465037

Strand: Direct

Name: bphB [H]

Synonym: RPB_2169

Alternate gene names: 86749290

Gene position: 2462599-2465037 (Clockwise)

Preceding gene: 86749285

Following gene: 86749291

Centisome position: 46.19

GC content: 65.23

Gene sequence:

>2439_bases
ATGGCGAGTGAAATCGTGCAATCAGATCTGGACTATTCGATTTGCGACCGCGAGCCGATCCATATCCCCGGCGCGATCCA
GCCGCACGGGGCCTTTCTCGCCGCGCGGGTCGACACTTCCGTGGTCACGCATGCCAGCGCCAATCTGGACGAGATGCTCG
GCATTTCCGCCGGCGCCGCGTTGGGACAAACGCTTCGGCAGTCGATCGGAGCGCTGGCCAGCGGCACCATCCTGGACGCG
ATTTCCCGCGACCACAGCGCGTTGTATCAGTTGTCCGGCTGGTACGGCAAAGACCTGCATCTGACTGCGTACCGGGTCGG
CCCGCAGGTCTGCATCGATGTCGAACCTGTTTCGCCGAGCGTTGCGCCGATCTCGCCGGTTCACCGGGTCCGCGCCGTGC
TGGACGCGTTCAGGTCCGCCGAGGGGCAGCGCGAACTCTGTGCGCTCGCGGTGCGCAGCCTGAGAGAGATCACCGGATAC
GACCGGGTGATGGCCTACCGCTTCGACACCGACGGCCATGGCGAAGTGATCGCCGAGGCTCGCGGTTGCGAGATGGATCC
GTATCTGGGGCTTCACTATCCCGCATCGGACATTCCGCCTCAGGCCAGGCAGCTCTATCTGCGCCAGCGCGTCGGCGCGA
TCGTCGATTCCCGCTATCGGCCGGTGCCGTTGCTCACGGACCGGACGCTCGATCACGGGACGCCGCTCGATCTGACCTGC
AGCACCTTGCGCAGCGTCTCGCCCTATCATCTGGCCTACATGCAGAACATGCAGACCGCGGCGAGCTTGACGATCGGACT
GGCGGAGGGGCCGGAGCTGTGGGGCATGTTGGTGTGTCACCATCGCACGCCGCGAAATCCGGGCCCGGAGCTGCGCGCGG
CCGCCGACATTCTGGGGCAGTTCGTCTCCACATTGCTGGGGCCTCTGGGTGAGGCCGAGGCCGCCAGGAAGAGGGTCGAG
CGCAACGCCACCATGATGCGGCTCGCCGAGCAGTTCGCGTCCGCGCCGACGATGCTCGAGGCGTTCGCCGCGACCGAATC
CGAGTTGCTTGATCTGGTCGATGCCGCGGGCGCCATCATCAGTTTCGCCGGGGTGGTTCGCTGCATCGGACGGACGCCGC
CGCCCGGCCAGGCCGAGCGGGCGCTCGCGCGGCTGCGTGATGAATCCGCCGGCGAATTGCTGGCGTGCGACGACCTCGGC
TTGCGCCATCCCGAACTGTCCGCGTGTAAGCGGGGCGGCAGCGGCGCGCTGCTGCTGCCGCTGGTGGGCGCGGACGACGC
GATGTTGTGGTTTCGCCCGGAACAGTCGCGCACGACGCGCTGGGGCGGCAACCCGGCCGAACCCGCCTTGGCCGATGCGG
CCACCGGGCTGATATCGCCCCGCGCGTCCTTCGCCGTCTGGATCCAGACCGTGAGCGGTCATTCCGCCCCTTGGAAGGAA
GGCGATATCGCGATCGCGCACGAATTCCGGAAACTCATTGAAGGCGAGACGGCCCGGCGAACGAAGGCCGAACTCACACA
GCTCCGTCTGGCTCGTGAACAGGATCAGATCGTCCAGGCGGCAAGGCTGAAAGTCGCACTCGAGAATCTGCGCGACGGCG
TCGCGATGTTCGACGCCGACAGTCGGCTGGTGATGTGCAACAATTTGTACGCCAAACTTTATCGCTTGCCGGAAGCGCTG
CAACAAGTCGGCACGCATATCCGGGACATCGTTCAGTCCTGCATCGCGAACGGCGTCGTTGCGGATGATATCGGAAGTCA
GGAGGAATGGCTGAAGCTGTATGTTCTTCCGACCGATACCTCCAGCCGGATCCAGCAACTGTCCGATGGGCGGCTGATCA
ACCTGACCCGGCAGCCTCTGCCGGAAGGCGGCTGGGTCAGCACCCACGAGGACATCACCGAGCAGCAGCGCCGCGAGGCC
GAAATTCTCTTTCTCGCGCACCACGACCTGCTGACCGGACTGGCCAATCGCGCGGCGTTTGATGAAACCGTCGAGACGGC
GGTGGCGCGTCTGCAGCGGAACGGCGAGCCGTTCACCTTGTTCATGCTCGATCTCGACCGGTTCAAGCAGGTCAATGACA
CGTTCGGGCACCCGGCGGGAGACCAGTTGCTGCGGGAAGCTGCGCAACGGCTCAGATCCTCCGTCCGAAAGACCGACATT
CTCGCTCGCCTCGGCGGCGACGAATTCGCGATCGTTCAGTTCGGCGCAGGGGACCGCTTCAAGGCCGCGAAGGGGCTGGC
CGAGCGAATCGTCAGGTTGATCTCGCAACCCTTCGACCTCGGCGGGGCGCAGGTTTCGGTCGGGATCAGCATCGGGATTG
CAATAGCGCCGCACGCCGCAACGGATGCGGCGGCGTTGCTCAAGATGGCCGATGTTGCGCTCTATGCGGTGAAGTCCGAG
GGCCGGAATGGATTTCGATTCTTCGAGCCGGAGGCGTGA

Upstream 100 bases:

>100_bases
CAGCGGGTCGACGACGACCCGCCGTTTCCACGCGCGGTGGGCGCCCGGTTCGGAGTCATGGCTGATCGGCCCAGCCCGGT
CCGGAAAGAGACGATCAGCC

Downstream 100 bases:

>100_bases
TCGCGTCGGCGGTCGGACCGGGCTGAACAGGGCGCGGCCGTTGCCGGTTTCGCGCATGGCGGCGCCGCGCGGACCGTCCG
CAAATTTTAATGCACCTGCA

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 812; Mature: 811

Protein sequence:

>812_residues
MASEIVQSDLDYSICDREPIHIPGAIQPHGAFLAARVDTSVVTHASANLDEMLGISAGAALGQTLRQSIGALASGTILDA
ISRDHSALYQLSGWYGKDLHLTAYRVGPQVCIDVEPVSPSVAPISPVHRVRAVLDAFRSAEGQRELCALAVRSLREITGY
DRVMAYRFDTDGHGEVIAEARGCEMDPYLGLHYPASDIPPQARQLYLRQRVGAIVDSRYRPVPLLTDRTLDHGTPLDLTC
STLRSVSPYHLAYMQNMQTAASLTIGLAEGPELWGMLVCHHRTPRNPGPELRAAADILGQFVSTLLGPLGEAEAARKRVE
RNATMMRLAEQFASAPTMLEAFAATESELLDLVDAAGAIISFAGVVRCIGRTPPPGQAERALARLRDESAGELLACDDLG
LRHPELSACKRGGSGALLLPLVGADDAMLWFRPEQSRTTRWGGNPAEPALADAATGLISPRASFAVWIQTVSGHSAPWKE
GDIAIAHEFRKLIEGETARRTKAELTQLRLAREQDQIVQAARLKVALENLRDGVAMFDADSRLVMCNNLYAKLYRLPEAL
QQVGTHIRDIVQSCIANGVVADDIGSQEEWLKLYVLPTDTSSRIQQLSDGRLINLTRQPLPEGGWVSTHEDITEQQRREA
EILFLAHHDLLTGLANRAAFDETVETAVARLQRNGEPFTLFMLDLDRFKQVNDTFGHPAGDQLLREAAQRLRSSVRKTDI
LARLGGDEFAIVQFGAGDRFKAAKGLAERIVRLISQPFDLGGAQVSVGISIGIAIAPHAATDAAALLKMADVALYAVKSE
GRNGFRFFEPEA

Sequences:

>Translated_812_residues
MASEIVQSDLDYSICDREPIHIPGAIQPHGAFLAARVDTSVVTHASANLDEMLGISAGAALGQTLRQSIGALASGTILDA
ISRDHSALYQLSGWYGKDLHLTAYRVGPQVCIDVEPVSPSVAPISPVHRVRAVLDAFRSAEGQRELCALAVRSLREITGY
DRVMAYRFDTDGHGEVIAEARGCEMDPYLGLHYPASDIPPQARQLYLRQRVGAIVDSRYRPVPLLTDRTLDHGTPLDLTC
STLRSVSPYHLAYMQNMQTAASLTIGLAEGPELWGMLVCHHRTPRNPGPELRAAADILGQFVSTLLGPLGEAEAARKRVE
RNATMMRLAEQFASAPTMLEAFAATESELLDLVDAAGAIISFAGVVRCIGRTPPPGQAERALARLRDESAGELLACDDLG
LRHPELSACKRGGSGALLLPLVGADDAMLWFRPEQSRTTRWGGNPAEPALADAATGLISPRASFAVWIQTVSGHSAPWKE
GDIAIAHEFRKLIEGETARRTKAELTQLRLAREQDQIVQAARLKVALENLRDGVAMFDADSRLVMCNNLYAKLYRLPEAL
QQVGTHIRDIVQSCIANGVVADDIGSQEEWLKLYVLPTDTSSRIQQLSDGRLINLTRQPLPEGGWVSTHEDITEQQRREA
EILFLAHHDLLTGLANRAAFDETVETAVARLQRNGEPFTLFMLDLDRFKQVNDTFGHPAGDQLLREAAQRLRSSVRKTDI
LARLGGDEFAIVQFGAGDRFKAAKGLAERIVRLISQPFDLGGAQVSVGISIGIAIAPHAATDAAALLKMADVALYAVKSE
GRNGFRFFEPEA
>Mature_811_residues
ASEIVQSDLDYSICDREPIHIPGAIQPHGAFLAARVDTSVVTHASANLDEMLGISAGAALGQTLRQSIGALASGTILDAI
SRDHSALYQLSGWYGKDLHLTAYRVGPQVCIDVEPVSPSVAPISPVHRVRAVLDAFRSAEGQRELCALAVRSLREITGYD
RVMAYRFDTDGHGEVIAEARGCEMDPYLGLHYPASDIPPQARQLYLRQRVGAIVDSRYRPVPLLTDRTLDHGTPLDLTCS
TLRSVSPYHLAYMQNMQTAASLTIGLAEGPELWGMLVCHHRTPRNPGPELRAAADILGQFVSTLLGPLGEAEAARKRVER
NATMMRLAEQFASAPTMLEAFAATESELLDLVDAAGAIISFAGVVRCIGRTPPPGQAERALARLRDESAGELLACDDLGL
RHPELSACKRGGSGALLLPLVGADDAMLWFRPEQSRTTRWGGNPAEPALADAATGLISPRASFAVWIQTVSGHSAPWKEG
DIAIAHEFRKLIEGETARRTKAELTQLRLAREQDQIVQAARLKVALENLRDGVAMFDADSRLVMCNNLYAKLYRLPEALQ
QVGTHIRDIVQSCIANGVVADDIGSQEEWLKLYVLPTDTSSRIQQLSDGRLINLTRQPLPEGGWVSTHEDITEQQRREAE
ILFLAHHDLLTGLANRAAFDETVETAVARLQRNGEPFTLFMLDLDRFKQVNDTFGHPAGDQLLREAAQRLRSSVRKTDIL
ARLGGDEFAIVQFGAGDRFKAAKGLAERIVRLISQPFDLGGAQVSVGISIGIAIAPHAATDAAALLKMADVALYAVKSEG
RNGFRFFEPEA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=37.5690607734807, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1788381, Length=189, Percent_Identity=37.5661375661376, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=35.195530726257, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=37.5757575757576, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=33.7579617834395, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=31.9148936170213, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=32.7868852459016, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=37.3493975903614, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=34.7305389221557, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=34.7305389221557, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=32.7160493827161, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=30.9090909090909, Blast_Score=73, Evalue=9e-14,
Organism=Escherichia coli, GI1787056, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 88308; Mature: 88176

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50887 GGDEF ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEIVQSDLDYSICDREPIHIPGAIQPHGAFLAARVDTSVVTHASANLDEMLGISAGAA
CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCHHHHHCCHHHHH
LGQTLRQSIGALASGTILDAISRDHSALYQLSGWYGKDLHLTAYRVGPQVCIDVEPVSPS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCC
VAPISPVHRVRAVLDAFRSAEGQRELCALAVRSLREITGYDRVMAYRFDTDGHGEVIAEA
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEC
RGCEMDPYLGLHYPASDIPPQARQLYLRQRVGAIVDSRYRPVPLLTDRTLDHGTPLDLTC
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHH
STLRSVSPYHLAYMQNMQTAASLTIGLAEGPELWGMLVCHHRTPRNPGPELRAAADILGQ
HHHHCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHEEEEECCCCCCCCCHHHHHHHHHHH
FVSTLLGPLGEAEAARKRVERNATMMRLAEQFASAPTMLEAFAATESELLDLVDAAGAII
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SFAGVVRCIGRTPPPGQAERALARLRDESAGELLACDDLGLRHPELSACKRGGSGALLLP
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEEE
LVGADDAMLWFRPEQSRTTRWGGNPAEPALADAATGLISPRASFAVWIQTVSGHSAPWKE
EECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC
GDIAIAHEFRKLIEGETARRTKAELTQLRLAREQDQIVQAARLKVALENLRDGVAMFDAD
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
SRLVMCNNLYAKLYRLPEALQQVGTHIRDIVQSCIANGVVADDIGSQEEWLKLYVLPTDT
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEECCC
SSRIQQLSDGRLINLTRQPLPEGGWVSTHEDITEQQRREAEILFLAHHDLLTGLANRAAF
HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHH
DETVETAVARLQRNGEPFTLFMLDLDRFKQVNDTFGHPAGDQLLREAAQRLRSSVRKTDI
HHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LARLGGDEFAIVQFGAGDRFKAAKGLAERIVRLISQPFDLGGAQVSVGISIGIAIAPHAA
HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCH
TDAAALLKMADVALYAVKSEGRNGFRFFEPEA
HHHHHHHHHHHHHHEEEECCCCCCCEECCCCC
>Mature Secondary Structure 
ASEIVQSDLDYSICDREPIHIPGAIQPHGAFLAARVDTSVVTHASANLDEMLGISAGAA
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCHHHHHCCHHHHH
LGQTLRQSIGALASGTILDAISRDHSALYQLSGWYGKDLHLTAYRVGPQVCIDVEPVSPS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCC
VAPISPVHRVRAVLDAFRSAEGQRELCALAVRSLREITGYDRVMAYRFDTDGHGEVIAEA
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEC
RGCEMDPYLGLHYPASDIPPQARQLYLRQRVGAIVDSRYRPVPLLTDRTLDHGTPLDLTC
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHH
STLRSVSPYHLAYMQNMQTAASLTIGLAEGPELWGMLVCHHRTPRNPGPELRAAADILGQ
HHHHCCCCHHHHHHHHHHHHHHEEEECCCCCHHHHEEEEECCCCCCCCCHHHHHHHHHHH
FVSTLLGPLGEAEAARKRVERNATMMRLAEQFASAPTMLEAFAATESELLDLVDAAGAII
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SFAGVVRCIGRTPPPGQAERALARLRDESAGELLACDDLGLRHPELSACKRGGSGALLLP
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHCCCCCEEEEE
LVGADDAMLWFRPEQSRTTRWGGNPAEPALADAATGLISPRASFAVWIQTVSGHSAPWKE
EECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC
GDIAIAHEFRKLIEGETARRTKAELTQLRLAREQDQIVQAARLKVALENLRDGVAMFDAD
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
SRLVMCNNLYAKLYRLPEALQQVGTHIRDIVQSCIANGVVADDIGSQEEWLKLYVLPTDT
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEECCC
SSRIQQLSDGRLINLTRQPLPEGGWVSTHEDITEQQRREAEILFLAHHDLLTGLANRAAF
HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHH
DETVETAVARLQRNGEPFTLFMLDLDRFKQVNDTFGHPAGDQLLREAAQRLRSSVRKTDI
HHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LARLGGDEFAIVQFGAGDRFKAAKGLAERIVRLISQPFDLGGAQVSVGISIGIAIAPHAA
HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCH
TDAAALLKMADVALYAVKSEGRNGFRFFEPEA
HHHHHHHHHHHHHHEEEECCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]