| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is hcl [H]
Identifier: 86749190
GI number: 86749190
Start: 2351180
End: 2352550
Strand: Direct
Name: hcl [H]
Synonym: RPB_2069
Alternate gene names: 86749190
Gene position: 2351180-2352550 (Clockwise)
Preceding gene: 86749189
Following gene: 86749191
Centisome position: 44.1
GC content: 72.87
Gene sequence:
>1371_bases ATGAGCGCGCCGCGCCGCATCGATGATCTGATCGCGTTGATCCGACGCGGACGGGTGCTGCTGCCGGACGGCCGCGACGT GACGATCGCGGAGGCTTGGCACGACGCCGAGACCGATCCGGCGGCGCGATGGATCGCGCCGGGCGACCGCGTGGTGTTGT CCGAGCCTGCCGGCGCCGATCTGGTACGCGCCACGCTCGCGGTGTGGGCGCAAGGCGGCGTTGCGGTGTTCGGCGTCGAT CCGCATCGCTGCGGCGACTGGCCGGCCGATGTTCGCGTGCGGAGCTGGCCGGACGGCGCGGTGCTGCACGATGCGTCGCC GCGCACCGACGCTGTGGCTGTGATCCATACGTCGTCGGGAACGACGGGGCGGCCGAAGCTGGCGCGCAGGTCGTTCGAGA GCCTCGCGGCCGAGGCGGAGCGCTATGCCGCGTGCTACGCGCCGGCCGCCGGCGCGCGCGCTTATCTGGCCGCGCCGATC ACGCACTCGTTTGCATTCGGCGCGATGCTCGGTCTGCTCGCGGCCGGCTGCGTGGTGCAAGTCGCGCCGGTGTTCCGGCC ACGCGCGCTGGCGGACGCATTGCGCGGCGGCGCCGACATCGTCGTGCTGACGCCGCCGATGGCGCGGCTTGCGATCGAGG CGGCGCAGGAGCGCGATCAGCCGCTGCGGTGCGCGCCGCAGCTGGTGATCGCCGGCGCCGGCGCCGTGCCGGGCCGGCTC GACGCGGAGTTTCGCCGCGCATTCGGCTGCGGCCTCGCGCGCAACTACGGCGCGTCGGAAACCGGCGCGAGTTTCGGCGC GGCGCAGTCGCTGCCCGAGGGCTGCCTCGGCCGGCCGTTCCGCGGCGTCCGTGTCGTGTCGCCCCGGCCGGGCGACCACA TCGGCGAACTGATCGTCGATCTCGACCACCCGATCCTCAGCCTCGAAGGCAAGACCGCGACGCCACCAATGCAGCGCGGC CTGTGGCGCAGCGGCGATCTCGCCGAGGTCGACGACGATCAACGGGTGTGGCTGCGCGGACGGATCGACGATCGCGTCAA GATCAACGGCCATCTGATCGATTGCGCCGCGCTGGCGGCGCAGGCGCGGGCGGCGCCGGGCGTCAGCGATGCGGTGGCGC TGGCGCTGCCACGGCCGCAGCGCGGCGAGATCCATGATCTGGTGCTGATCTGCGAGTGCCGCGATGAGGCTGTGTCGGCG GCCGATATCAGCCTGGCTGCGATGCCGCAGACGCCGATGATCGTGCTGACCCGGACCGAATTTCCGCGCACGGCGGCGGG CAAACCGGATCGCGACCAATTGCGCAGCTTCGCCGAAGCGCGGCTGCGCCGCGGGGCGGCGCGAGGCGAGATGCAAGGCG AGCCGCGATGA
Upstream 100 bases:
>100_bases TGCTCGGCGACGACGAATTGTTCGCCGACATCGCCCGCGCGATCGGCGAATTGCGACAGCCGCAACGCGCCGCGACGCCC CTGTCGCTGTCGGAGACGGC
Downstream 100 bases:
>100_bases ACGCAGCCGGGCGCAGCATCGAAATCGATCGCTGCGCGCGCGACGCGGTGGCGCTGCTGCCGCATGTCGTGCCGCATCGT GACGGCCTGCAGACGCTCGG
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: 3-hydroxybenzoyl-CoA synthetase [H]
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MSAPRRIDDLIALIRRGRVLLPDGRDVTIAEAWHDAETDPAARWIAPGDRVVLSEPAGADLVRATLAVWAQGGVAVFGVD PHRCGDWPADVRVRSWPDGAVLHDASPRTDAVAVIHTSSGTTGRPKLARRSFESLAAEAERYAACYAPAAGARAYLAAPI THSFAFGAMLGLLAAGCVVQVAPVFRPRALADALRGGADIVVLTPPMARLAIEAAQERDQPLRCAPQLVIAGAGAVPGRL DAEFRRAFGCGLARNYGASETGASFGAAQSLPEGCLGRPFRGVRVVSPRPGDHIGELIVDLDHPILSLEGKTATPPMQRG LWRSGDLAEVDDDQRVWLRGRIDDRVKINGHLIDCAALAAQARAAPGVSDAVALALPRPQRGEIHDLVLICECRDEAVSA ADISLAAMPQTPMIVLTRTEFPRTAAGKPDRDQLRSFAEARLRRGAARGEMQGEPR
Sequences:
>Translated_456_residues MSAPRRIDDLIALIRRGRVLLPDGRDVTIAEAWHDAETDPAARWIAPGDRVVLSEPAGADLVRATLAVWAQGGVAVFGVD PHRCGDWPADVRVRSWPDGAVLHDASPRTDAVAVIHTSSGTTGRPKLARRSFESLAAEAERYAACYAPAAGARAYLAAPI THSFAFGAMLGLLAAGCVVQVAPVFRPRALADALRGGADIVVLTPPMARLAIEAAQERDQPLRCAPQLVIAGAGAVPGRL DAEFRRAFGCGLARNYGASETGASFGAAQSLPEGCLGRPFRGVRVVSPRPGDHIGELIVDLDHPILSLEGKTATPPMQRG LWRSGDLAEVDDDQRVWLRGRIDDRVKINGHLIDCAALAAQARAAPGVSDAVALALPRPQRGEIHDLVLICECRDEAVSA ADISLAAMPQTPMIVLTRTEFPRTAAGKPDRDQLRSFAEARLRRGAARGEMQGEPR >Mature_455_residues SAPRRIDDLIALIRRGRVLLPDGRDVTIAEAWHDAETDPAARWIAPGDRVVLSEPAGADLVRATLAVWAQGGVAVFGVDP HRCGDWPADVRVRSWPDGAVLHDASPRTDAVAVIHTSSGTTGRPKLARRSFESLAAEAERYAACYAPAAGARAYLAAPIT HSFAFGAMLGLLAAGCVVQVAPVFRPRALADALRGGADIVVLTPPMARLAIEAAQERDQPLRCAPQLVIAGAGAVPGRLD AEFRRAFGCGLARNYGASETGASFGAAQSLPEGCLGRPFRGVRVVSPRPGDHIGELIVDLDHPILSLEGKTATPPMQRGL WRSGDLAEVDDDQRVWLRGRIDDRVKINGHLIDCAALAAQARAAPGVSDAVALALPRPQRGEIHDLVLICECRDEAVSAA DISLAAMPQTPMIVLTRTEFPRTAAGKPDRDQLRSFAEARLRRGAARGEMQGEPR
Specific function: Catalyzes the ligation of 3-hydroxybenzoate or 4- hydroxybenzoate and CoA at the expense of ATP. The enzyme shows low activity towards benzoate, 4-aminobenzoate, 3-aminobenzoate, 3-fluorobenzoate, 4-fluorobenzoate, 3-chlorobenzoate, and 4- chlorobenzoate.
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. Benzoate-CoA ligase subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000873 - InterPro: IPR011957 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.27 [H]
Molecular weight: Translated: 48473; Mature: 48342
Theoretical pI: Translated: 7.48; Mature: 7.48
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPRRIDDLIALIRRGRVLLPDGRDVTIAEAWHDAETDPAARWIAPGDRVVLSEPAGAD CCCCHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCCCCCEEECCCCEEEEECCCCHH LVRATLAVWAQGGVAVFGVDPHRCGDWPADVRVRSWPDGAVLHDASPRTDAVAVIHTSSG HHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEECCCCCEEECCCCCCCEEEEEEECCC TTGRPKLARRSFESLAAEAERYAACYAPAAGARAYLAAPITHSFAFGAMLGLLAAGCVVQ CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH VAPVFRPRALADALRGGADIVVLTPPMARLAIEAAQERDQPLRCAPQLVIAGAGAVPGRL HHHHCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC DAEFRRAFGCGLARNYGASETGASFGAAQSLPEGCLGRPFRGVRVVSPRPGDHIGELIVD CHHHHHHHCCCHHCCCCCCCCCCCCCHHHCCCHHHCCCCCCCEEEECCCCCHHHHHHHHC LDHPILSLEGKTATPPMQRGLWRSGDLAEVDDDQRVWLRGRIDDRVKINGHLIDCAALAA CCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEECCEEEHHHHHHH QARAAPGVSDAVALALPRPQRGEIHDLVLICECRDEAVSAADISLAAMPQTPMIVLTRTE HHHCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHCEEEEECCCCCEEEEEECC FPRTAAGKPDRDQLRSFAEARLRRGAARGEMQGEPR CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SAPRRIDDLIALIRRGRVLLPDGRDVTIAEAWHDAETDPAARWIAPGDRVVLSEPAGAD CCCHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCCCCCEEECCCCEEEEECCCCHH LVRATLAVWAQGGVAVFGVDPHRCGDWPADVRVRSWPDGAVLHDASPRTDAVAVIHTSSG HHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEECCCCCEEECCCCCCCEEEEEEECCC TTGRPKLARRSFESLAAEAERYAACYAPAAGARAYLAAPITHSFAFGAMLGLLAAGCVVQ CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH VAPVFRPRALADALRGGADIVVLTPPMARLAIEAAQERDQPLRCAPQLVIAGAGAVPGRL HHHHCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC DAEFRRAFGCGLARNYGASETGASFGAAQSLPEGCLGRPFRGVRVVSPRPGDHIGELIVD CHHHHHHHCCCHHCCCCCCCCCCCCCHHHCCCHHHCCCCCCCEEEECCCCCHHHHHHHHC LDHPILSLEGKTATPPMQRGLWRSGDLAEVDDDQRVWLRGRIDDRVKINGHLIDCAALAA CCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEECCEEEHHHHHHH QARAAPGVSDAVALALPRPQRGEIHDLVLICECRDEAVSAADISLAAMPQTPMIVLTRTE HHHCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCHHCEEEEECCCCCEEEEEECC FPRTAAGKPDRDQLRSFAEARLRRGAARGEMQGEPR CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11208796 [H]