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The map label for this gene is ycdJ [C]

Identifier: 86748987

GI number: 86748987

Start: 2128999

End: 2129904

Strand: Direct

Name: ycdJ [C]

Synonym: RPB_1864

Alternate gene names: 86748987

Gene position: 2128999-2129904 (Clockwise)

Preceding gene: 86748986

Following gene: 86748988

Centisome position: 39.93

GC content: 66.0

Gene sequence:

>906_bases
ATGCCCGATCTCGCCGACTTGTTTCCGGGCTTCGGCTCGGAATGGATCAACACCTCGTCCGGCCGCATCTTCGCGCGCAC
CGGCGGTGACGGGCCGCCGCTGCTGCTGCTGCACGGCTTTTCCGAAACCCATGTGATGTGGCACCGCGTCGCGCCGCTTC
TCGCCGAGCGCTTCAAGCTGATCATCGCCGATCTGCCCGGCTATGGCTGGTCCGACATGCCGGAGAGCGATGCCGAGCAC
ACGCCCTACACCAAGCGGGCGATGGCCGCGCAACTGATCGAGGCGATGGAGCAACTCGGCCATGTGCACTTCGCGCTCGC
CGGCCACGACCGCGGCGGCCGCGTCAGCTATCGGCTGGCGCTCGATCATCCCGGCCGGCTGTCGAAGCTGGCGGTGCTCG
ATATCCTGCCGACCTACGAGTACTGGATGCGGATGGACCGCGCCTATGCGCTGAAGATCTATCACTGGAGCTTCCTCGCG
CAGCCCGCACCGCTGCCGGAAACGCTGATCGGCGCCAGTTCGGATTTCTATCTGAAGAACAAGCTCGCGAGCTGGGCCAA
GAAGAAGGATCTGTCCTGCTTCGATCCGCGCGCGATGGAGCACTATCTCGCGCCGTTCCGCGATCCGATGCGGCTGCACG
CGATGTGCGAGGATTATCGCGCCGGTGCCAACGCCGACTTCGCGCACGACAAGGCCGACCATGATGCCGGCAAGAAAATC
CCGGTGCCGATGCTGGCGCTGTGGGGCGATGCCGGCATCGCCCAGTCCGCGGCGACGCCGCTCGACACCTGGCGGAACTG
GGCGAAGGACGTGCAAGGCGGCCCAGTCGATTCCGGCCATTTCCTCACCGAGGAGGCGCCGGAGCAGACGGCGCAGGCGC
TGCTCGATTTCTTCACGGCAGGCTAG

Upstream 100 bases:

>100_bases
TCCGACCTCCCCCGCAAGCGGGAGAGGTTGCGCCGTGCCAGCCGGCCCTGGCATGCGAAAAGTATTTGGGATGCACGAGT
AAGAATTGGAGGAGCTCCCG

Downstream 100 bases:

>100_bases
GCGCATCGAGCGGCGTCTCGCGACGGGCTTTGCACGCGCCCGCCCAACGCCTAATGTCCGCCCGGCGTTGTCGCCGATAA
AAACCACCGGGAGGAATATT

Product: Alpha/beta hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MPDLADLFPGFGSEWINTSSGRIFARTGGDGPPLLLLHGFSETHVMWHRVAPLLAERFKLIIADLPGYGWSDMPESDAEH
TPYTKRAMAAQLIEAMEQLGHVHFALAGHDRGGRVSYRLALDHPGRLSKLAVLDILPTYEYWMRMDRAYALKIYHWSFLA
QPAPLPETLIGASSDFYLKNKLASWAKKKDLSCFDPRAMEHYLAPFRDPMRLHAMCEDYRAGANADFAHDKADHDAGKKI
PVPMLALWGDAGIAQSAATPLDTWRNWAKDVQGGPVDSGHFLTEEAPEQTAQALLDFFTAG

Sequences:

>Translated_301_residues
MPDLADLFPGFGSEWINTSSGRIFARTGGDGPPLLLLHGFSETHVMWHRVAPLLAERFKLIIADLPGYGWSDMPESDAEH
TPYTKRAMAAQLIEAMEQLGHVHFALAGHDRGGRVSYRLALDHPGRLSKLAVLDILPTYEYWMRMDRAYALKIYHWSFLA
QPAPLPETLIGASSDFYLKNKLASWAKKKDLSCFDPRAMEHYLAPFRDPMRLHAMCEDYRAGANADFAHDKADHDAGKKI
PVPMLALWGDAGIAQSAATPLDTWRNWAKDVQGGPVDSGHFLTEEAPEQTAQALLDFFTAG
>Mature_300_residues
PDLADLFPGFGSEWINTSSGRIFARTGGDGPPLLLLHGFSETHVMWHRVAPLLAERFKLIIADLPGYGWSDMPESDAEHT
PYTKRAMAAQLIEAMEQLGHVHFALAGHDRGGRVSYRLALDHPGRLSKLAVLDILPTYEYWMRMDRAYALKIYHWSFLAQ
PAPLPETLIGASSDFYLKNKLASWAKKKDLSCFDPRAMEHYLAPFRDPMRLHAMCEDYRAGANADFAHDKADHDAGKKIP
VPMLALWGDAGIAQSAATPLDTWRNWAKDVQGGPVDSGHFLTEEAPEQTAQALLDFFTAG

Specific function: Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has low activity towards chloroacetate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI218777840, Length=288, Percent_Identity=25, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI13376164, Length=288, Percent_Identity=25, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17554012, Length=311, Percent_Identity=21.2218649517685, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.8.1.3 [H]

Molecular weight: Translated: 33530; Mature: 33399

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLADLFPGFGSEWINTSSGRIFARTGGDGPPLLLLHGFSETHVMWHRVAPLLAERFKL
CCCHHHHCCCCCHHHCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHE
IIADLPGYGWSDMPESDAEHTPYTKRAMAAQLIEAMEQLGHVHFALAGHDRGGRVSYRLA
EHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEE
LDHPGRLSKLAVLDILPTYEYWMRMDRAYALKIYHWSFLAQPAPLPETLIGASSDFYLKN
ECCCCCHHHHHHHHHHHHHHHHHHHCHHEEEEEEEHHHHCCCCCCCHHHHCCCCCHHHHH
KLASWAKKKDLSCFDPRAMEHYLAPFRDPMRLHAMCEDYRAGANADFAHDKADHDAGKKI
HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PVPMLALWGDAGIAQSAATPLDTWRNWAKDVQGGPVDSGHFLTEEAPEQTAQALLDFFTA
CCCCEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure 
PDLADLFPGFGSEWINTSSGRIFARTGGDGPPLLLLHGFSETHVMWHRVAPLLAERFKL
CCHHHHCCCCCHHHCCCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHE
IIADLPGYGWSDMPESDAEHTPYTKRAMAAQLIEAMEQLGHVHFALAGHDRGGRVSYRLA
EHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEE
LDHPGRLSKLAVLDILPTYEYWMRMDRAYALKIYHWSFLAQPAPLPETLIGASSDFYLKN
ECCCCCHHHHHHHHHHHHHHHHHHHCHHEEEEEEEHHHHCCCCCCCHHHHCCCCCHHHHH
KLASWAKKKDLSCFDPRAMEHYLAPFRDPMRLHAMCEDYRAGANADFAHDKADHDAGKKI
HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PVPMLALWGDAGIAQSAATPLDTWRNWAKDVQGGPVDSGHFLTEEAPEQTAQALLDFFTA
CCCCEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA