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The map label for this gene is 86748847

Identifier: 86748847

GI number: 86748847

Start: 1965434

End: 1966273

Strand: Direct

Name: 86748847

Synonym: RPB_1724

Alternate gene names: NA

Gene position: 1965434-1966273 (Clockwise)

Preceding gene: 86748846

Following gene: 86748848

Centisome position: 36.86

GC content: 67.98

Gene sequence:

>840_bases
ATGACCCTGCAATCCACCTCCGAACCCGCCGAGCATCAGGGCGCCGCGGTCGGCAGCTCGTTCTACGCCGCGATGCGCAT
CCTGCCGCGTCCGCAGCGCGAGGCGATGTTTCAGGTCTACAGCTTCTGCCGCTACGTCGACGATATCGCCGATTCCGACG
AGCCACGCGACCTGCGGGCTGCCGGTCTGCAGCGCTGGCGCGACGACATCGACGCGCTGTATCGCGGCGCGCCGCCGCCG
CGGCTCGCGGATTATCAGGGCTCTGTGCAAGCCTTCGGTCTGAAGCGCGAGGATTTCCTCGCGATCATCGACGGCATGGA
GATGGACGTCACCGCCGACATCCGCGCGCCGGAAGACGCCACCCTCGATCTTTACTGCGATCGCGTCGCCAGCGCGGTCG
GGCGGCTGTCGGTGCGGATCTTCGGCCTGCCCGAGCAGGATGGCATCCTGCTCGCGCACCATCTCGGCCGCGCGCTGCAG
CTCACCAACATCCTGCGCGACATCGACGAGGACGCCGGCCTCGGCCGGCTGTATCTGCCGCGCGAAGGCCTGCTCGCCGC
CGGCATCACCAGCGTCGATCCGGCGACTGTCGCCGCCGATCCGGCGGTTCCAAATGTCTGCGCGCCGCTGGTGGCGCGCG
CGCTGAAGCACTTCGACGCCGCCGACGAGGTGATGAGCCGCAATCCGCGCCGCGTGGTCAAGGCGCCGCGGATCATGGGC
AAGTATTACTATTCGATCCTTCAACTGCTGATCGCGCGCGGCTTCGCGCCGCCGCGGACGCCGGTCAAGCTCGGCAAGGC
GGCGAAGATCGCCATCCTGCTACAATACGCGATCGTCTGA

Upstream 100 bases:

>100_bases
AGCCGATCGAATTCCTGCTGTCCACGATCGGCGCGGTCGGATCGGAAATCGCCCGTCGCACCTTTGGAAAGGGGCCGGTC
TCGAAGCCGGCGCCGCGCGC

Downstream 100 bases:

>100_bases
TGCCGAAAACCGTTCACATCATCGGTGCTGGAATCTCCGGTCTCGCGGCCGCGACGAAGCTCGCGCGCGCCGGGCTGACC
GTCCACGTCCACGAAGCGAT

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTLQSTSEPAEHQGAAVGSSFYAAMRILPRPQREAMFQVYSFCRYVDDIADSDEPRDLRAAGLQRWRDDIDALYRGAPPP
RLADYQGSVQAFGLKREDFLAIIDGMEMDVTADIRAPEDATLDLYCDRVASAVGRLSVRIFGLPEQDGILLAHHLGRALQ
LTNILRDIDEDAGLGRLYLPREGLLAAGITSVDPATVAADPAVPNVCAPLVARALKHFDAADEVMSRNPRRVVKAPRIMG
KYYYSILQLLIARGFAPPRTPVKLGKAAKIAILLQYAIV

Sequences:

>Translated_279_residues
MTLQSTSEPAEHQGAAVGSSFYAAMRILPRPQREAMFQVYSFCRYVDDIADSDEPRDLRAAGLQRWRDDIDALYRGAPPP
RLADYQGSVQAFGLKREDFLAIIDGMEMDVTADIRAPEDATLDLYCDRVASAVGRLSVRIFGLPEQDGILLAHHLGRALQ
LTNILRDIDEDAGLGRLYLPREGLLAAGITSVDPATVAADPAVPNVCAPLVARALKHFDAADEVMSRNPRRVVKAPRIMG
KYYYSILQLLIARGFAPPRTPVKLGKAAKIAILLQYAIV
>Mature_278_residues
TLQSTSEPAEHQGAAVGSSFYAAMRILPRPQREAMFQVYSFCRYVDDIADSDEPRDLRAAGLQRWRDDIDALYRGAPPPR
LADYQGSVQAFGLKREDFLAIIDGMEMDVTADIRAPEDATLDLYCDRVASAVGRLSVRIFGLPEQDGILLAHHLGRALQL
TNILRDIDEDAGLGRLYLPREGLLAAGITSVDPATVAADPAVPNVCAPLVARALKHFDAADEVMSRNPRRVVKAPRIMGK
YYYSILQLLIARGFAPPRTPVKLGKAAKIAILLQYAIV

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene. Probably part of an operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017828
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 30631; Mature: 30499

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1 ; PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLQSTSEPAEHQGAAVGSSFYAAMRILPRPQREAMFQVYSFCRYVDDIADSDEPRDLRA
CCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AGLQRWRDDIDALYRGAPPPRLADYQGSVQAFGLKREDFLAIIDGMEMDVTADIRAPEDA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCC
TLDLYCDRVASAVGRLSVRIFGLPEQDGILLAHHLGRALQLTNILRDIDEDAGLGRLYLP
HHHHHHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
REGLLAAGITSVDPATVAADPAVPNVCAPLVARALKHFDAADEVMSRNPRRVVKAPRIMG
CCCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHH
KYYYSILQLLIARGFAPPRTPVKLGKAAKIAILLQYAIV
HHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TLQSTSEPAEHQGAAVGSSFYAAMRILPRPQREAMFQVYSFCRYVDDIADSDEPRDLRA
CCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
AGLQRWRDDIDALYRGAPPPRLADYQGSVQAFGLKREDFLAIIDGMEMDVTADIRAPEDA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCC
TLDLYCDRVASAVGRLSVRIFGLPEQDGILLAHHLGRALQLTNILRDIDEDAGLGRLYLP
HHHHHHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
REGLLAAGITSVDPATVAADPAVPNVCAPLVARALKHFDAADEVMSRNPRRVVKAPRIMG
CCCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHH
KYYYSILQLLIARGFAPPRTPVKLGKAAKIAILLQYAIV
HHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]