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The map label for this gene is 86748846

Identifier: 86748846

GI number: 86748846

Start: 1964559

End: 1965437

Strand: Direct

Name: 86748846

Synonym: RPB_1723

Alternate gene names: NA

Gene position: 1964559-1965437 (Clockwise)

Preceding gene: 86748845

Following gene: 86748847

Centisome position: 36.85

GC content: 66.44

Gene sequence:

>879_bases
ATGACGTCTGCGAGTGAACTGCGATCCGGCAAGACCCACCGGGACGAGAATTTTCCGGTCGCGTCGTGGATCATCCATCC
GCGGCATCGCGAGCTGATTCTGGCGTTCTACAATTTCGTCCGCACCGCCGACGACATCGCCGACCACGCGATGCTCGACG
CCGCGACCAAGCTCGACTACCTCGATCTGCTCGAGGCCGAACTGCTCGGCCACGGGGCGACCCAGCCGGAGGCGGTCGAA
CTGCGGCGCGCGCTGGCCGAGCGGGGCATGCCGCCGCGCCACGCGCTGGATGTGCTGATTGCGTTTCGAATGGACGTCAC
CAAGCTGCGCTACGAGGATTGGGACGAGGTAATCCATTATTGCCGCTATTCGGCAATGCCGGTCGGCCGTTTCATGCTCG
ACGTCCACGGCGAGAGCACCTCGACCTGGCCGGCGTCGGACGCGCTCTGCGCCGGGCTGCAGATCAACAATCACCTGCAG
GATTGCGGCAAGGATTATCGCAACCTCAACCGGGTCTACCTGCCGCGCGACGCGCTGGATGCGGCTGGCGCCAAGGTCGA
GGACCTCGGCCATCTGACGTCCTCGCCGGCGCTGCTGCGCTGCCTGCAGGGGCTCGCCGTGCGCACCGATGTGCTGCTCG
GCGAGGGCCGCCCGCTCGCCGCCGAGATCAAGGATTTCCGGCTCGGCCTCGAAGTCTCGGTGATCCAGGCCTTCGCCGAT
CGAATCGTGGCGATGCTCAAGGTGCGCGACCCGCTGAGCGAGCGGGTGCACCCGAAGCCGATCGAATTCCTGCTGTCCAC
GATCGGCGCGGTCGGATCGGAAATCGCCCGTCGCACCTTTGGAAAGGGGCCGGTCTCGAAGCCGGCGCCGCGCGCATGA

Upstream 100 bases:

>100_bases
GGACCTGCCCGGGATGCCGGGCGGGTCCGTTCGCGACGTTTCCATGCCTGAAATCCCGATCGGAAATGTCCATGTCCGAA
ACAAGCGTTGGCCGGTGCCG

Downstream 100 bases:

>100_bases
CCCTGCAATCCACCTCCGAACCCGCCGAGCATCAGGGCGCCGCGGTCGGCAGCTCGTTCTACGCCGCGATGCGCATCCTG
CCGCGTCCGCAGCGCGAGGC

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTSASELRSGKTHRDENFPVASWIIHPRHRELILAFYNFVRTADDIADHAMLDAATKLDYLDLLEAELLGHGATQPEAVE
LRRALAERGMPPRHALDVLIAFRMDVTKLRYEDWDEVIHYCRYSAMPVGRFMLDVHGESTSTWPASDALCAGLQINNHLQ
DCGKDYRNLNRVYLPRDALDAAGAKVEDLGHLTSSPALLRCLQGLAVRTDVLLGEGRPLAAEIKDFRLGLEVSVIQAFAD
RIVAMLKVRDPLSERVHPKPIEFLLSTIGAVGSEIARRTFGKGPVSKPAPRA

Sequences:

>Translated_292_residues
MTSASELRSGKTHRDENFPVASWIIHPRHRELILAFYNFVRTADDIADHAMLDAATKLDYLDLLEAELLGHGATQPEAVE
LRRALAERGMPPRHALDVLIAFRMDVTKLRYEDWDEVIHYCRYSAMPVGRFMLDVHGESTSTWPASDALCAGLQINNHLQ
DCGKDYRNLNRVYLPRDALDAAGAKVEDLGHLTSSPALLRCLQGLAVRTDVLLGEGRPLAAEIKDFRLGLEVSVIQAFAD
RIVAMLKVRDPLSERVHPKPIEFLLSTIGAVGSEIARRTFGKGPVSKPAPRA
>Mature_291_residues
TSASELRSGKTHRDENFPVASWIIHPRHRELILAFYNFVRTADDIADHAMLDAATKLDYLDLLEAELLGHGATQPEAVEL
RRALAERGMPPRHALDVLIAFRMDVTKLRYEDWDEVIHYCRYSAMPVGRFMLDVHGESTSTWPASDALCAGLQINNHLQD
CGKDYRNLNRVYLPRDALDAAGAKVEDLGHLTSSPALLRCLQGLAVRTDVLLGEGRPLAAEIKDFRLGLEVSVIQAFADR
IVAMLKVRDPLSERVHPKPIEFLLSTIGAVGSEIARRTFGKGPVSKPAPRA

Specific function: Probably part of the operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017827
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: NA

Molecular weight: Translated: 32466; Mature: 32334

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSASELRSGKTHRDENFPVASWIIHPRHRELILAFYNFVRTADDIADHAMLDAATKLDY
CCCHHHHHCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLLEAELLGHGATQPEAVELRRALAERGMPPRHALDVLIAFRMDVTKLRYEDWDEVIHY
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
CRYSAMPVGRFMLDVHGESTSTWPASDALCAGLQINNHLQDCGKDYRNLNRVYLPRDALD
HHHCCCCHHHHEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEEECCHHHHH
AAGAKVEDLGHLTSSPALLRCLQGLAVRTDVLLGEGRPLAAEIKDFRLGLEVSVIQAFAD
HCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
RIVAMLKVRDPLSERVHPKPIEFLLSTIGAVGSEIARRTFGKGPVSKPAPRA
HHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TSASELRSGKTHRDENFPVASWIIHPRHRELILAFYNFVRTADDIADHAMLDAATKLDY
CCHHHHHCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLLEAELLGHGATQPEAVELRRALAERGMPPRHALDVLIAFRMDVTKLRYEDWDEVIHY
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
CRYSAMPVGRFMLDVHGESTSTWPASDALCAGLQINNHLQDCGKDYRNLNRVYLPRDALD
HHHCCCCHHHHEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCEEECCHHHHH
AAGAKVEDLGHLTSSPALLRCLQGLAVRTDVLLGEGRPLAAEIKDFRLGLEVSVIQAFAD
HCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
RIVAMLKVRDPLSERVHPKPIEFLLSTIGAVGSEIARRTFGKGPVSKPAPRA
HHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]