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The map label for this gene is sodB [H]

Identifier: 86748800

GI number: 86748800

Start: 1909151

End: 1909750

Strand: Direct

Name: sodB [H]

Synonym: RPB_1677

Alternate gene names: 86748800

Gene position: 1909151-1909750 (Clockwise)

Preceding gene: 86748799

Following gene: 86748806

Centisome position: 35.81

GC content: 59.83

Gene sequence:

>600_bases
ATGACCTTCACGCTTCCTGAATTGCCCTATGCCTACGACGCGCTCCAGCCGTACATGTCGAAGGAGACGCTCGAATATCA
CCACGACAAGCATCATCAGGCCTATGTCACCAACGGCAACAACCTGCTGAAGGGCACCGAATTCGAGGGCAAGTCGCTCG
AGGAGATCGTCAAGGGCTCGTTCGGCAAGAACGCTCCGCTGTTCAACAATGCCGGCCAGCACTTCAACCACATCCATTTC
TGGAAGTGGATGAAGCCGAATGGCGGCGGCACCAAGCTGCCGGGCGCGCTGGAAAAGAAGATCAACGAGGACCTCGGCGG
GCTCGACAAGTTCAAGGCCGATTTCGCCGCCGCCGGCGCCGGCCAGTTCGGCTCGGGCTGGGCTTGGCTGTCGGTCAAGG
ACGGCAAGCTCGAAATCTCCAAGACCGCCAACGGCGAGAATCCGCTGGTGCACGGCGCCACGCCGATCCTCGGCGTCGAC
GTCTGGGAGCACTCCTACTACATCGACTACCGCAACCGCCGGCCCGACTATCTCAAGGCCTTCGTCGACAATCTCATCAA
CTGGGAATACGTCGAGGAGTTGTATTCCAAGGCGGTCTGA

Upstream 100 bases:

>100_bases
CACTGTTGCAATTCAGAATAGATATTGGGTCCGTAGTCGGAACCTTCTATAAGGGGGCTCGTTAAGTCGAAGTCCCCCAC
CATTGTGGAAATGATGACCC

Downstream 100 bases:

>100_bases
TCGGGGGCTGATCAGGCTCTCGGGTTCACGATCCGGAAATCGAAGGGCGGCCGGCCAGCGGCCGCCTTTTTCGTCTGCGA
TGGCGATCGCAGCGCTGTTC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTFTLPELPYAYDALQPYMSKETLEYHHDKHHQAYVTNGNNLLKGTEFEGKSLEEIVKGSFGKNAPLFNNAGQHFNHIHF
WKWMKPNGGGTKLPGALEKKINEDLGGLDKFKADFAAAGAGQFGSGWAWLSVKDGKLEISKTANGENPLVHGATPILGVD
VWEHSYYIDYRNRRPDYLKAFVDNLINWEYVEELYSKAV

Sequences:

>Translated_199_residues
MTFTLPELPYAYDALQPYMSKETLEYHHDKHHQAYVTNGNNLLKGTEFEGKSLEEIVKGSFGKNAPLFNNAGQHFNHIHF
WKWMKPNGGGTKLPGALEKKINEDLGGLDKFKADFAAAGAGQFGSGWAWLSVKDGKLEISKTANGENPLVHGATPILGVD
VWEHSYYIDYRNRRPDYLKAFVDNLINWEYVEELYSKAV
>Mature_198_residues
TFTLPELPYAYDALQPYMSKETLEYHHDKHHQAYVTNGNNLLKGTEFEGKSLEEIVKGSFGKNAPLFNNAGQHFNHIHFW
KWMKPNGGGTKLPGALEKKINEDLGGLDKFKADFAAAGAGQFGSGWAWLSVKDGKLEISKTANGENPLVHGATPILGVDV
WEHSYYIDYRNRRPDYLKAFVDNLINWEYVEELYSKAV

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=44.5, Blast_Score=151, Evalue=5e-37,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=44.5, Blast_Score=151, Evalue=5e-37,
Organism=Homo sapiens, GI67782309, Length=196, Percent_Identity=38.265306122449, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=55.2083333333333, Blast_Score=205, Evalue=1e-54,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=49, Blast_Score=185, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=37.9310344827586, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=37.3134328358209, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=200, Percent_Identity=36.5, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=39, Blast_Score=131, Evalue=3e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22495; Mature: 22364

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTLPELPYAYDALQPYMSKETLEYHHDKHHQAYVTNGNNLLKGTEFEGKSLEEIVKGS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCHHHHHCCC
FGKNAPLFNNAGQHFNHIHFWKWMKPNGGGTKLPGALEKKINEDLGGLDKFKADFAAAGA
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC
GQFGSGWAWLSVKDGKLEISKTANGENPLVHGATPILGVDVWEHSYYIDYRNRRPDYLKA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHH
FVDNLINWEYVEELYSKAV
HHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
TFTLPELPYAYDALQPYMSKETLEYHHDKHHQAYVTNGNNLLKGTEFEGKSLEEIVKGS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCHHHHHCCC
FGKNAPLFNNAGQHFNHIHFWKWMKPNGGGTKLPGALEKKINEDLGGLDKFKADFAAAGA
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC
GQFGSGWAWLSVKDGKLEISKTANGENPLVHGATPILGVDVWEHSYYIDYRNRRPDYLKA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHH
FVDNLINWEYVEELYSKAV
HHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]