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The map label for this gene is exbD [H]

Identifier: 86748779

GI number: 86748779

Start: 1886118

End: 1886573

Strand: Direct

Name: exbD [H]

Synonym: RPB_1656

Alternate gene names: 86748779

Gene position: 1886118-1886573 (Clockwise)

Preceding gene: 86748778

Following gene: 86748780

Centisome position: 35.38

GC content: 66.67

Gene sequence:

>456_bases
ATGGCGGTGACGCTGAAGGATCCGCACGACGGCGACCTCGCCGAACTGTCCGAAATCAACGTGACGCCGTTCATCGACGT
GATGCTGGTGCTGCTGATCATCTTCATGGTGGCGGCGCCGCTGTCGACGGTGGATGTCGGCGTCGATCTGCCGACCTCCA
ATGCGCAGCCGCAGCCCAGGCCCGACAAGCCGCTCTATCTCACCGTCAAGCCGGACCTGTCACTGGCGCTCGGCAATGAG
GATGTGGCGCGTGAGGCGTTGCAGGCCGCGCTGGATGGACAGACCTCCGGCGATCGCGAGCAGCGGGTGTTCCTGCGCGC
CGACGGCGTGGTGCCGTATCGTGACCTGATGGCGGTGATGAATCTGCTGCGCGGGGCGGGCTATCTCAAAGTGGCGCTGG
TCGGCCTCGAGGACACCGGGCAGGGCAGTGCGATCGCGGCGACGCCGCGGCCATGA

Upstream 100 bases:

>100_bases
AGTGCTGCAGCACCTGTCGCGCGATCTGGAACGGCAGCAGAAGCCTGTCGTCAGCCGCGCCGCGCCTGCGCGCTCGCGCT
GGATGGCGGAGTAGCCGACC

Downstream 100 bases:

>100_bases
GATTCGGCTGGCACGATCCGGACGCGCGGCCTGCCGGTTCGCCGCGAGGGTCCCGTGCGCGCTGGCTGCTTGCGGCGGCG
ACGGTCACCGGACTTCATGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MAVTLKDPHDGDLAELSEINVTPFIDVMLVLLIIFMVAAPLSTVDVGVDLPTSNAQPQPRPDKPLYLTVKPDLSLALGNE
DVAREALQAALDGQTSGDREQRVFLRADGVVPYRDLMAVMNLLRGAGYLKVALVGLEDTGQGSAIAATPRP

Sequences:

>Translated_151_residues
MAVTLKDPHDGDLAELSEINVTPFIDVMLVLLIIFMVAAPLSTVDVGVDLPTSNAQPQPRPDKPLYLTVKPDLSLALGNE
DVAREALQAALDGQTSGDREQRVFLRADGVVPYRDLMAVMNLLRGAGYLKVALVGLEDTGQGSAIAATPRP
>Mature_150_residues
AVTLKDPHDGDLAELSEINVTPFIDVMLVLLIIFMVAAPLSTVDVGVDLPTSNAQPQPRPDKPLYLTVKPDLSLALGNED
VAREALQAALDGQTSGDREQRVFLRADGVVPYRDLMAVMNLLRGAGYLKVALVGLEDTGQGSAIAATPRP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=143, Percent_Identity=55.2447552447552, Blast_Score=152, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16090; Mature: 15959

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTLKDPHDGDLAELSEINVTPFIDVMLVLLIIFMVAAPLSTVDVGVDLPTSNAQPQPR
CEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
PDKPLYLTVKPDLSLALGNEDVAREALQAALDGQTSGDREQRVFLRADGVVPYRDLMAVM
CCCCEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHH
NLLRGAGYLKVALVGLEDTGQGSAIAATPRP
HHHCCCCEEEEEEEECCCCCCCCEEECCCCC
>Mature Secondary Structure 
AVTLKDPHDGDLAELSEINVTPFIDVMLVLLIIFMVAAPLSTVDVGVDLPTSNAQPQPR
EEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
PDKPLYLTVKPDLSLALGNEDVAREALQAALDGQTSGDREQRVFLRADGVVPYRDLMAVM
CCCCEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHH
NLLRGAGYLKVALVGLEDTGQGSAIAATPRP
HHHCCCCEEEEEEEECCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]