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The map label for this gene is ydhC [H]

Identifier: 86748776

GI number: 86748776

Start: 1882944

End: 1883660

Strand: Direct

Name: ydhC [H]

Synonym: RPB_1653

Alternate gene names: 86748776

Gene position: 1882944-1883660 (Clockwise)

Preceding gene: 86748769

Following gene: 86748777

Centisome position: 35.32

GC content: 66.39

Gene sequence:

>717_bases
ATGCGCACAATGTCCCCTCCGGTCGGATTGCCCGCTCTCGCTGCGACGGACCTCGTCGGCCAGGTCGCGCGTGCGCTGAC
GCTCGCCATTCTGCAGGGGCGGCTGCCGCCCGGCTCCAAAGTTGTCGAGGCCGGGATCGCCCGGGAGCTGGGTGTCAGCA
GGGCGCCGGTGCGCGAAGCCGCGCGGCTGCTGGAAAGTCAGGGCCTGCTGGTGGCGAGCCCGCGTCGCGGCTTCTTCGTG
CGGCAATTTGCGGCCGATGACATCGACGACATCTTCGATCTGCGCCTGTGCGTGGAGCGGCACGCCGGCGTGCTCGCCGC
GCGCAAACTCACCCCTGCGACACGCGATGCGTTGCGGCGGCAGATCGACGTCCTTCACCAGACCGCAAATCTCGACGACC
CGGCCCGGCAGGTCGAAGAGGACTACCGGTTTCATCGGCTGATCTGCGAGATCGCCGGCAACCGACGGCTGTTGCGCCTG
TTCGACGATCTGGCGTCCGAACTACGCATGGTCATCGGTCTGATCGGCCGACTGTACGACGACCCGCACGAAATCGCGCG
GACGCACGAACCGGTTCTCGCTGCGATCGAGCAAGGCCACCCCGAAAGGATCGTGGCGCATATCGATTATCACATCGGTC
ATGCCTGGCGCGAGGTCGCGAAACTGGTGCGGGAGATTCCTCCCGCGACTGCCGGCGGCAAAATACGATCCGTGTGA

Upstream 100 bases:

>100_bases
ATCTGGATCAATTTTTGATGCGACAAAGACGCAACCGCAAGGCTAAACTGTCGACAATCGGCGCTTAAATATTGTCCACC
ACGCCGAAACGGACCGTTTC

Downstream 100 bases:

>100_bases
TGCCGACGAACGCCCGACGATTGATCATCAAGCCATGGGAGTCTCTGCGTGAAGGCCGTCTACAGCGAACTGCATCGAAG
CCACGACCCGCAATTCTTTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MRTMSPPVGLPALAATDLVGQVARALTLAILQGRLPPGSKVVEAGIARELGVSRAPVREAARLLESQGLLVASPRRGFFV
RQFAADDIDDIFDLRLCVERHAGVLAARKLTPATRDALRRQIDVLHQTANLDDPARQVEEDYRFHRLICEIAGNRRLLRL
FDDLASELRMVIGLIGRLYDDPHEIARTHEPVLAAIEQGHPERIVAHIDYHIGHAWREVAKLVREIPPATAGGKIRSV

Sequences:

>Translated_238_residues
MRTMSPPVGLPALAATDLVGQVARALTLAILQGRLPPGSKVVEAGIARELGVSRAPVREAARLLESQGLLVASPRRGFFV
RQFAADDIDDIFDLRLCVERHAGVLAARKLTPATRDALRRQIDVLHQTANLDDPARQVEEDYRFHRLICEIAGNRRLLRL
FDDLASELRMVIGLIGRLYDDPHEIARTHEPVLAAIEQGHPERIVAHIDYHIGHAWREVAKLVREIPPATAGGKIRSV
>Mature_238_residues
MRTMSPPVGLPALAATDLVGQVARALTLAILQGRLPPGSKVVEAGIARELGVSRAPVREAARLLESQGLLVASPRRGFFV
RQFAADDIDDIFDLRLCVERHAGVLAARKLTPATRDALRRQIDVLHQTANLDDPARQVEEDYRFHRLICEIAGNRRLLRL
FDDLASELRMVIGLIGRLYDDPHEIARTHEPVLAAIEQGHPERIVAHIDYHIGHAWREVAKLVREIPPATAGGKIRSV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26355; Mature: 26355

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTMSPPVGLPALAATDLVGQVARALTLAILQGRLPPGSKVVEAGIARELGVSRAPVREA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHH
ARLLESQGLLVASPRRGFFVRQFAADDIDDIFDLRLCVERHAGVLAARKLTPATRDALRR
HHHHHHCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHH
QIDVLHQTANLDDPARQVEEDYRFHRLICEIAGNRRLLRLFDDLASELRMVIGLIGRLYD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
DPHEIARTHEPVLAAIEQGHPERIVAHIDYHIGHAWREVAKLVREIPPATAGGKIRSV
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRTMSPPVGLPALAATDLVGQVARALTLAILQGRLPPGSKVVEAGIARELGVSRAPVREA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHH
ARLLESQGLLVASPRRGFFVRQFAADDIDDIFDLRLCVERHAGVLAARKLTPATRDALRR
HHHHHHCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHH
QIDVLHQTANLDDPARQVEEDYRFHRLICEIAGNRRLLRLFDDLASELRMVIGLIGRLYD
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
DPHEIARTHEPVLAAIEQGHPERIVAHIDYHIGHAWREVAKLVREIPPATAGGKIRSV
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]