| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86748768
Identifier: 86748768
GI number: 86748768
Start: 1874664
End: 1875716
Strand: Direct
Name: 86748768
Synonym: RPB_1645
Alternate gene names: NA
Gene position: 1874664-1875716 (Clockwise)
Preceding gene: 86748767
Following gene: 86748769
Centisome position: 35.16
GC content: 65.43
Gene sequence:
>1053_bases ATGACGACTTTAGAGAGCAAAGTCGGGCAGGAGCCACGGACCGCCGTCTGGCTGGCCGGAACGGCGGCATTTCTGGTGGC CTGGGGCCTGATCTACGCGCAACTGCAGCCGTTCTCCAAATGGGCGGTCGGCCTGCTTCCGCTCGAATCCGGCAGTCATG CGGCGGAGGCTATCGAATTCTTCGTCTACGACACTCCGAAGGTGTTGATGCTGCTGACCCTCGTGGTGTTCGGTATGGGC GTGCTGCGGAGCTGGTTTTCGCCGGAGCGGACCCGCGCGCTGCTCGCCGGCCGGCGTGAAGGTGTCGGCAACGTCGCCGC CGCCGGGCTGGGCATCCTCACGCCGTTCTGCTCCTGCTCGGCGGTGCCGCTGTTCATCGGCTTTGTCAGTGCCGGCGTGC CGCTCGGGGTGACCTTCTCGTTCCTGATCGCCGCGCCGATGATTAACGAAGTCGCGCTCGGATTGCTGTTCGTTCTGCTG GGCTGGAAAGTGGCGCTCGCCTATCTGGGCTTCGGGCTCGGCATTGCGATCGTCGCGGGCTGGGTGATCGGGCGCTTCCA CCTCGAAGGCTGGCTGCAGGACTGGGTCCGCAACGTCCGTTCAAGTGCCGCCGAGATCCCGTCGTCGACCGTGACGTTGG TCGATCGTCTCCGGGCGGGGATCGAGGCCGTGGTCGACATCGTCGGCAGGGTCTGGATCTGGGTCATCGCCGGCATCGCT GTCGGCGCCTTCATTCATGGCTATGTGCCCGCCGACCTGCTGGCCTCGATCATGGGGCGCGACGCGTGGTGGTCCGTGCC CGCGGCGGTCTTGCTCGGCATTCCGATGTATTCCAATGCCGCGGGTATCATTCCGGTGGTCGAGGCGCTGATCGGCAAGG GCGCCGCACTCGGCACCGTGCTGGCCTTCATGATTAGCGTCATCGCGCTGTCGGCGCCGGAACTGATCATCCTGCACAAG GTGCTGACCCCCCGACTGATCGCCGTGTTCGTCGCTGTCGTGGCGGCCGGCATCCTGGCGGTGGGGTTCCTGTTCAACGC ATTGTTCACGTAG
Upstream 100 bases:
>100_bases AGTGGGTTCGCTACCGGCGCAATCCAAATCTGGATCCGAAAATTATCGCCGTGGTCGAGGCCGTGCTGGCGCTTCCGGCG CGCGACAGGAGGGCGGCCGC
Downstream 100 bases:
>100_bases GAGCGCGTCGTCATGAAGGACGTCAAGGTACTCGGTCCCGGCTGCAAACGTTGCGTCACGACCGCCGAGATGGTGCAGGG GGAGGCCGACAGGCTCGGCG
Product: permease
Products: NA
Alternate protein names: Permease Family Protein; Permease Superfamily; Permease-Like Protein; Integral Membrane Protein
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MTTLESKVGQEPRTAVWLAGTAAFLVAWGLIYAQLQPFSKWAVGLLPLESGSHAAEAIEFFVYDTPKVLMLLTLVVFGMG VLRSWFSPERTRALLAGRREGVGNVAAAGLGILTPFCSCSAVPLFIGFVSAGVPLGVTFSFLIAAPMINEVALGLLFVLL GWKVALAYLGFGLGIAIVAGWVIGRFHLEGWLQDWVRNVRSSAAEIPSSTVTLVDRLRAGIEAVVDIVGRVWIWVIAGIA VGAFIHGYVPADLLASIMGRDAWWSVPAAVLLGIPMYSNAAGIIPVVEALIGKGAALGTVLAFMISVIALSAPELIILHK VLTPRLIAVFVAVVAAGILAVGFLFNALFT
Sequences:
>Translated_350_residues MTTLESKVGQEPRTAVWLAGTAAFLVAWGLIYAQLQPFSKWAVGLLPLESGSHAAEAIEFFVYDTPKVLMLLTLVVFGMG VLRSWFSPERTRALLAGRREGVGNVAAAGLGILTPFCSCSAVPLFIGFVSAGVPLGVTFSFLIAAPMINEVALGLLFVLL GWKVALAYLGFGLGIAIVAGWVIGRFHLEGWLQDWVRNVRSSAAEIPSSTVTLVDRLRAGIEAVVDIVGRVWIWVIAGIA VGAFIHGYVPADLLASIMGRDAWWSVPAAVLLGIPMYSNAAGIIPVVEALIGKGAALGTVLAFMISVIALSAPELIILHK VLTPRLIAVFVAVVAAGILAVGFLFNALFT >Mature_349_residues TTLESKVGQEPRTAVWLAGTAAFLVAWGLIYAQLQPFSKWAVGLLPLESGSHAAEAIEFFVYDTPKVLMLLTLVVFGMGV LRSWFSPERTRALLAGRREGVGNVAAAGLGILTPFCSCSAVPLFIGFVSAGVPLGVTFSFLIAAPMINEVALGLLFVLLG WKVALAYLGFGLGIAIVAGWVIGRFHLEGWLQDWVRNVRSSAAEIPSSTVTLVDRLRAGIEAVVDIVGRVWIWVIAGIAV GAFIHGYVPADLLASIMGRDAWWSVPAAVLLGIPMYSNAAGIIPVVEALIGKGAALGTVLAFMISVIALSAPELIILHKV LTPRLIAVFVAVVAAGILAVGFLFNALFT
Specific function: Unknown
COG id: COG0701
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36961; Mature: 36830
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLESKVGQEPRTAVWLAGTAAFLVAWGLIYAQLQPFSKWAVGLLPLESGSHAAEAIEF CCCCCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHEEEECCCCCHHHHHHHH FVYDTPKVLMLLTLVVFGMGVLRSWFSPERTRALLAGRREGVGNVAAAGLGILTPFCSCS HHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC AVPLFIGFVSAGVPLGVTFSFLIAAPMINEVALGLLFVLLGWKVALAYLGFGLGIAIVAG HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVIGRFHLEGWLQDWVRNVRSSAAEIPSSTVTLVDRLRAGIEAVVDIVGRVWIWVIAGIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGAFIHGYVPADLLASIMGRDAWWSVPAAVLLGIPMYSNAAGIIPVVEALIGKGAALGTV HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH LAFMISVIALSAPELIILHKVLTPRLIAVFVAVVAAGILAVGFLFNALFT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTLESKVGQEPRTAVWLAGTAAFLVAWGLIYAQLQPFSKWAVGLLPLESGSHAAEAIEF CCCCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHEEEECCCCCHHHHHHHH FVYDTPKVLMLLTLVVFGMGVLRSWFSPERTRALLAGRREGVGNVAAAGLGILTPFCSCS HHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC AVPLFIGFVSAGVPLGVTFSFLIAAPMINEVALGLLFVLLGWKVALAYLGFGLGIAIVAG HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVIGRFHLEGWLQDWVRNVRSSAAEIPSSTVTLVDRLRAGIEAVVDIVGRVWIWVIAGIA HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGAFIHGYVPADLLASIMGRDAWWSVPAAVLLGIPMYSNAAGIIPVVEALIGKGAALGTV HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHH LAFMISVIALSAPELIILHKVLTPRLIAVFVAVVAAGILAVGFLFNALFT HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA