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The map label for this gene is 86748738

Identifier: 86748738

GI number: 86748738

Start: 1821553

End: 1822002

Strand: Direct

Name: 86748738

Synonym: RPB_1614

Alternate gene names: NA

Gene position: 1821553-1822002 (Clockwise)

Preceding gene: 86748737

Following gene: 86748739

Centisome position: 34.16

GC content: 61.78

Gene sequence:

>450_bases
ATGTTGCGAGCAGTGGTTGTGGCCGGAGCGTTGTTGCTGAGCGTGAATGCCGTGGTGGCACAGCAGGACCTCGTCGACAG
AACGCAGAAGCTGATGAAGGACAACGGCCGGAACGTCATGGCGCTCAGCGCGATGGTGAAGGGCGACAAGCCCTACGATC
AGGCCACGGTGGATGCGGCGCTGAAGCAGTTCGATGAAACCGCGAAGGAGATGCCGAAGCTGTTCCCGGAGAGCGTGAAG
GGCCTCAAGGCGTTCGACAGCCAGTACAGTTCGTCGCCGAAGATCTGGCAGGAGCGCGCCAAGTTCGATGCCGAAATCGC
GACCTTCGCCAAGGCGGTGAGCGACGCGAAGAGCAGCGTCAAGGACGCCTCGACCTTGAAGGCCTCGTTCCCGGCGATCG
GCAAATCCTGCGGAAGCTGCCACGAATCCTTCCGCCTCAAGGACGGCTAG

Upstream 100 bases:

>100_bases
ATATGGAATAATTCTATCCAGTCGGTGTTTGCAGGAATCGGGTCCGGCCGTCGGCCGGATCGGCCTCGTTTTTCGACTAG
AGCCCGTGGGGAGATGGTGC

Downstream 100 bases:

>100_bases
TCGTCGCATCGGGCGGCGCAGCGCCTGCCCGCCTGACCCTGCGAACCGGCCGTTGCAGCGACGGCCGGTTCGATACTCTT
TTGATCCGCCAGCCTGCACG

Product: cytochrome c, class II

Products: NA

Alternate protein names: Cytochrome c556 [H]

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MLRAVVVAGALLLSVNAVVAQQDLVDRTQKLMKDNGRNVMALSAMVKGDKPYDQATVDAALKQFDETAKEMPKLFPESVK
GLKAFDSQYSSSPKIWQERAKFDAEIATFAKAVSDAKSSVKDASTLKASFPAIGKSCGSCHESFRLKDG

Sequences:

>Translated_149_residues
MLRAVVVAGALLLSVNAVVAQQDLVDRTQKLMKDNGRNVMALSAMVKGDKPYDQATVDAALKQFDETAKEMPKLFPESVK
GLKAFDSQYSSSPKIWQERAKFDAEIATFAKAVSDAKSSVKDASTLKASFPAIGKSCGSCHESFRLKDG
>Mature_149_residues
MLRAVVVAGALLLSVNAVVAQQDLVDRTQKLMKDNGRNVMALSAMVKGDKPYDQATVDAALKQFDETAKEMPKLFPESVK
GLKAFDSQYSSSPKIWQERAKFDAEIATFAKAVSDAKSSVKDASTLKASFPAIGKSCGSCHESFRLKDG

Specific function: Low-spin monoheme cytochrome c [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 16091; Mature: 16091

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAVVVAGALLLSVNAVVAQQDLVDRTQKLMKDNGRNVMALSAMVKGDKPYDQATVDAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCHHHHHHHH
LKQFDETAKEMPKLFPESVKGLKAFDSQYSSSPKIWQERAKFDAEIATFAKAVSDAKSSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDASTLKASFPAIGKSCGSCHESFRLKDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLRAVVVAGALLLSVNAVVAQQDLVDRTQKLMKDNGRNVMALSAMVKGDKPYDQATVDAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCHHHHHHHH
LKQFDETAKEMPKLFPESVKGLKAFDSQYSSSPKIWQERAKFDAEIATFAKAVSDAKSSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDASTLKASFPAIGKSCGSCHESFRLKDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6273892 [H]