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The map label for this gene is rfaC [H]

Identifier: 86748723

GI number: 86748723

Start: 1801858

End: 1802802

Strand: Direct

Name: rfaC [H]

Synonym: RPB_1598

Alternate gene names: 86748723

Gene position: 1801858-1802802 (Clockwise)

Preceding gene: 86748716

Following gene: 86748727

Centisome position: 33.8

GC content: 68.78

Gene sequence:

>945_bases
ATGTCGGACATTCTCATCATCAAGACTTCCTCGCTCGGCGACGTGGTGCATCAGATGCCCGCGATGACCGATGCCGCGCG
CGCGGTTCCAGGGTTGCGACTGTCCTGGGTGGTCGAGGAGGCGTTCGCGCCATTGGCCCGTCTCCACCCAGCGGTCGCCG
ATGTGATTCCGGTGGCGACGCGGCGGTGGCGATCGCAACTCGCGTCGCGCGCGATCTGGCGCGAGATCGGCGATTTCGGC
ACACGCTTGCGCGAGCCGGATTTCGACAAGGTGATCGACACCCAGGGTCTGATCCGCTCCGCGGTGATCGCGCGCCTCGC
GCAAGGCGAGCGTCACGGCTACGATGCCGGCAGCATCCGCGAGCCGCTGGCCGCGCGGGTCTACAATGTCCGACACACCG
TGCGTCGCGATCTGCATGCGGTGACGCGCAATCGTTTACTCACCGGCTTCGCGCTCGGCTATCAGCCGTCGGCCGAGATC
GACTATGGCCTGATCCGCCCGCCGCGCGCGGATGACGGCGCGTACGCCGTGCTGCTGCACGGCACGTCGCGCGTCTCGAA
GGAGTGGCGTGCGGAGGACTGGATCGAGACCGGCCGCTGGCTGCAGAGCCGCGGCGTGCAGGTCGTGTTGCCGTGGGGCA
CCGAAGCCGAGCGGCAACTCGCAGAACAATTGTGCAGCGCCATCGCCGGCAGCCGCGTGCTGCCGCGGCAGCGGCTCGAT
CTCACCGCACAGGTGATCGCCAATGCCGCGCTGGTGGTCGGCGTCGACACCGGGCTGATGCATCTCGCCGCCGCCTATCG
CGTGCCACTGGTCGGCATCTATGTCTCGACCGATCCGGGGCTGACCGGCCCGGTCGGCAGCGGTCCGATGCGCGTATTGG
GCGGCAAGAGCGGCGCGCCCTCTGCGCGGCAGGCGATCGAGGCCGCCGAACGGCTGCTCGATTAG

Upstream 100 bases:

>100_bases
CAGCCAAACCGCACGGTTTTCCAGCGTTCCACAGGGGGAATCGACAATATGGTTGCCGAACTGTAACGAGTGCCGGTTGT
TGTGGCGGCCATCGGCGGCG

Downstream 100 bases:

>100_bases
TTCTGCGCTGCGTCGCTGCGCGCCATCGTGTCGAGGACCTTTGAGACGAACGCGTCGATATCGTCGCCCTCGAACAGAAA
GCCCTGAATACCCGCCGCCG

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSDILIIKTSSLGDVVHQMPAMTDAARAVPGLRLSWVVEEAFAPLARLHPAVADVIPVATRRWRSQLASRAIWREIGDFG
TRLREPDFDKVIDTQGLIRSAVIARLAQGERHGYDAGSIREPLAARVYNVRHTVRRDLHAVTRNRLLTGFALGYQPSAEI
DYGLIRPPRADDGAYAVLLHGTSRVSKEWRAEDWIETGRWLQSRGVQVVLPWGTEAERQLAEQLCSAIAGSRVLPRQRLD
LTAQVIANAALVVGVDTGLMHLAAAYRVPLVGIYVSTDPGLTGPVGSGPMRVLGGKSGAPSARQAIEAAERLLD

Sequences:

>Translated_314_residues
MSDILIIKTSSLGDVVHQMPAMTDAARAVPGLRLSWVVEEAFAPLARLHPAVADVIPVATRRWRSQLASRAIWREIGDFG
TRLREPDFDKVIDTQGLIRSAVIARLAQGERHGYDAGSIREPLAARVYNVRHTVRRDLHAVTRNRLLTGFALGYQPSAEI
DYGLIRPPRADDGAYAVLLHGTSRVSKEWRAEDWIETGRWLQSRGVQVVLPWGTEAERQLAEQLCSAIAGSRVLPRQRLD
LTAQVIANAALVVGVDTGLMHLAAAYRVPLVGIYVSTDPGLTGPVGSGPMRVLGGKSGAPSARQAIEAAERLLD
>Mature_313_residues
SDILIIKTSSLGDVVHQMPAMTDAARAVPGLRLSWVVEEAFAPLARLHPAVADVIPVATRRWRSQLASRAIWREIGDFGT
RLREPDFDKVIDTQGLIRSAVIARLAQGERHGYDAGSIREPLAARVYNVRHTVRRDLHAVTRNRLLTGFALGYQPSAEID
YGLIRPPRADDGAYAVLLHGTSRVSKEWRAEDWIETGRWLQSRGVQVVLPWGTEAERQLAEQLCSAIAGSRVLPRQRLDL
TAQVIANAALVVGVDTGLMHLAAAYRVPLVGIYVSTDPGLTGPVGSGPMRVLGGKSGAPSARQAIEAAERLLD

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=294, Percent_Identity=45.2380952380952, Blast_Score=238, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 34206; Mature: 34074

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDILIIKTSSLGDVVHQMPAMTDAARAVPGLRLSWVVEEAFAPLARLHPAVADVIPVAT
CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRWRSQLASRAIWREIGDFGTRLREPDFDKVIDTQGLIRSAVIARLAQGERHGYDAGSIR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
EPLAARVYNVRHTVRRDLHAVTRNRLLTGFALGYQPSAEIDYGLIRPPRADDGAYAVLLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
GTSRVSKEWRAEDWIETGRWLQSRGVQVVLPWGTEAERQLAEQLCSAIAGSRVLPRQRLD
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
LTAQVIANAALVVGVDTGLMHLAAAYRVPLVGIYVSTDPGLTGPVGSGPMRVLGGKSGAP
HHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCC
SARQAIEAAERLLD
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SDILIIKTSSLGDVVHQMPAMTDAARAVPGLRLSWVVEEAFAPLARLHPAVADVIPVAT
CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRWRSQLASRAIWREIGDFGTRLREPDFDKVIDTQGLIRSAVIARLAQGERHGYDAGSIR
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
EPLAARVYNVRHTVRRDLHAVTRNRLLTGFALGYQPSAEIDYGLIRPPRADDGAYAVLLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
GTSRVSKEWRAEDWIETGRWLQSRGVQVVLPWGTEAERQLAEQLCSAIAGSRVLPRQRLD
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
LTAQVIANAALVVGVDTGLMHLAAAYRVPLVGIYVSTDPGLTGPVGSGPMRVLGGKSGAP
HHHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCC
SARQAIEAAERLLD
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]