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The map label for this gene is 86748655

Identifier: 86748655

GI number: 86748655

Start: 1723555

End: 1724700

Strand: Direct

Name: 86748655

Synonym: RPB_1530

Alternate gene names: NA

Gene position: 1723555-1724700 (Clockwise)

Preceding gene: 86748653

Following gene: 86748656

Centisome position: 32.33

GC content: 60.38

Gene sequence:

>1146_bases
ATGCCGGGCTGTCGCCGAGCCACTCTTCCGCGGCGCATTTTGCTTGATATCCGAGGGATTGTTTGCGAAGAACAGCTGCC
TGAAATCAGCCCCGACAGTCAGCGCAGCCTTCATTTCCAGCCACTATTACACGGTTCAGCCGAAATGAATCAAGCCATAA
TCGTCACGTCGATCAACGCGCCGAATCCGGTGATGAAGGCGATCGCCAAGGATGCGAACCCCGCGGGATTCGATTTCATC
GTGGTCGGAGACACCAAGACTCCCGACGGCTTTGCGATCGACGGATGTCGATTTCTGAGCATCGACGAGCAGCTTTCGTC
CGGCTTGAAGTACGCCAGGGTCGCCCCGATGGCGAGTTATGCGCGCAAGAATGTCGGATACCTGTCGGCGATCAGTCGTG
GCGCGCAAATGATCGCGGAAACGGACGACGACAACTTTCCGCGGCCGGCATTCTTCGAGGAGCGCCGTCGTCGTCAGACC
GTGCCGACGGTTGCCGGCGCCGGATGGGTCAACGCCTATCGGTATTTTTCAGACAGCAACATTTGGCCCCGAGGTCTGCC
GCTCGATCATATTCAACGGGCCGTTCCGGAATGGGAGGCGTTGCCGGTCGGCGACGTCGACAGTCCGATTCAGCAGGGGC
TCGCCGACGAGAACCCCGACGTCGATGCGATCTACCGGCTCGCCCTGACGCTGCCGCAGAATTTTCGCACCGATCGGACC
GTGGCGTTCGGCGAAGGGGCCTGGTGTCCGTTCAACAGTCAGAACACCAGCTGGTGGCCGGACGCATTCCCGCTGATGTA
TCTGCCCGCCACCTGCAACTTCCGGGTGACCGACATCTGGCGCAGCCTGATCGCCCAGCGGATCGCGTGGCAGAACGGCT
GGCACATTCTGTTTCACGGCCCGACCGTGTGGCAGGATCGCAACGAACACGACCTGATGGCGGATTTCGAGGACGAGATC
CCGGGCTATCTCAACAATCATCGCATTCGGCTGATGCTGGAACAGTTACCGTTGCAGGGTGGCGTGGCCAATATCGCCCA
CGATCTGCATCGGTGCTACGAAGCGATGCTCGGTCTCGGTCTCGTGACCGCCGCTGAAATGACGTTGCTCGAGGCCTGGA
TCGAAGACATCCAGCGCGTCGGGTGA

Upstream 100 bases:

>100_bases
ATAACCAGGCTTGCGCCGTCCCGCTCATCCGGAACGCCGAAGGTGCACAGCACGATGCGCTTACGTCGACTCAAACGACA
ATCCTCCGCTCGCGCAGGAC

Downstream 100 bases:

>100_bases
GCCGATCGGTGATGTCGAGCGCCAATCTCTGTTCTGCAATCTGAGAAGTGAATCCGATGGGCTCGATCAATTGGCTGGAC
CGTCTGAGAACCGCATTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MPGCRRATLPRRILLDIRGIVCEEQLPEISPDSQRSLHFQPLLHGSAEMNQAIIVTSINAPNPVMKAIAKDANPAGFDFI
VVGDTKTPDGFAIDGCRFLSIDEQLSSGLKYARVAPMASYARKNVGYLSAISRGAQMIAETDDDNFPRPAFFEERRRRQT
VPTVAGAGWVNAYRYFSDSNIWPRGLPLDHIQRAVPEWEALPVGDVDSPIQQGLADENPDVDAIYRLALTLPQNFRTDRT
VAFGEGAWCPFNSQNTSWWPDAFPLMYLPATCNFRVTDIWRSLIAQRIAWQNGWHILFHGPTVWQDRNEHDLMADFEDEI
PGYLNNHRIRLMLEQLPLQGGVANIAHDLHRCYEAMLGLGLVTAAEMTLLEAWIEDIQRVG

Sequences:

>Translated_381_residues
MPGCRRATLPRRILLDIRGIVCEEQLPEISPDSQRSLHFQPLLHGSAEMNQAIIVTSINAPNPVMKAIAKDANPAGFDFI
VVGDTKTPDGFAIDGCRFLSIDEQLSSGLKYARVAPMASYARKNVGYLSAISRGAQMIAETDDDNFPRPAFFEERRRRQT
VPTVAGAGWVNAYRYFSDSNIWPRGLPLDHIQRAVPEWEALPVGDVDSPIQQGLADENPDVDAIYRLALTLPQNFRTDRT
VAFGEGAWCPFNSQNTSWWPDAFPLMYLPATCNFRVTDIWRSLIAQRIAWQNGWHILFHGPTVWQDRNEHDLMADFEDEI
PGYLNNHRIRLMLEQLPLQGGVANIAHDLHRCYEAMLGLGLVTAAEMTLLEAWIEDIQRVG
>Mature_380_residues
PGCRRATLPRRILLDIRGIVCEEQLPEISPDSQRSLHFQPLLHGSAEMNQAIIVTSINAPNPVMKAIAKDANPAGFDFIV
VGDTKTPDGFAIDGCRFLSIDEQLSSGLKYARVAPMASYARKNVGYLSAISRGAQMIAETDDDNFPRPAFFEERRRRQTV
PTVAGAGWVNAYRYFSDSNIWPRGLPLDHIQRAVPEWEALPVGDVDSPIQQGLADENPDVDAIYRLALTLPQNFRTDRTV
AFGEGAWCPFNSQNTSWWPDAFPLMYLPATCNFRVTDIWRSLIAQRIAWQNGWHILFHGPTVWQDRNEHDLMADFEDEIP
GYLNNHRIRLMLEQLPLQGGVANIAHDLHRCYEAMLGLGLVTAAEMTLLEAWIEDIQRVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI86564532, Length=359, Percent_Identity=32.8690807799443, Blast_Score=182, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI71996148, Length=347, Percent_Identity=33.7175792507205, Blast_Score=179, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI71988391, Length=355, Percent_Identity=32.6760563380282, Blast_Score=175, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI32567126, Length=341, Percent_Identity=32.8445747800587, Blast_Score=175, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI212642136, Length=360, Percent_Identity=32.2222222222222, Blast_Score=173, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI71983179, Length=377, Percent_Identity=32.6259946949602, Blast_Score=172, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI71987610, Length=370, Percent_Identity=32.4324324324324, Blast_Score=171, Evalue=4e-43,
Organism=Caenorhabditis elegans, GI17534161, Length=300, Percent_Identity=35.3333333333333, Blast_Score=168, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI17564316, Length=181, Percent_Identity=34.2541436464088, Blast_Score=92, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17564314, Length=147, Percent_Identity=29.9319727891156, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42895; Mature: 42764

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGCRRATLPRRILLDIRGIVCEEQLPEISPDSQRSLHFQPLLHGSAEMNQAIIVTSINA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCCCCCEEEEEECCC
PNPVMKAIAKDANPAGFDFIVVGDTKTPDGFAIDGCRFLSIDEQLSSGLKYARVAPMASY
CCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECCEEEEEEHHHHHCCCCHHHHHHHHHH
ARKNVGYLSAISRGAQMIAETDDDNFPRPAFFEERRRRQTVPTVAGAGWVNAYRYFSDSN
HHHCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHEECCCC
IWPRGLPLDHIQRAVPEWEALPVGDVDSPIQQGLADENPDVDAIYRLALTLPQNFRTDRT
CCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCE
VAFGEGAWCPFNSQNTSWWPDAFPLMYLPATCNFRVTDIWRSLIAQRIAWQNGWHILFHG
EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCCEEEEEC
PTVWQDRNEHDLMADFEDEIPGYLNNHRIRLMLEQLPLQGGVANIAHDLHRCYEAMLGLG
CEECCCCCCCCCCCCHHHHCCCCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LVTAAEMTLLEAWIEDIQRVG
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PGCRRATLPRRILLDIRGIVCEEQLPEISPDSQRSLHFQPLLHGSAEMNQAIIVTSINA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCCCCCEEEEEECCC
PNPVMKAIAKDANPAGFDFIVVGDTKTPDGFAIDGCRFLSIDEQLSSGLKYARVAPMASY
CCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEECCEEEEEEHHHHHCCCCHHHHHHHHHH
ARKNVGYLSAISRGAQMIAETDDDNFPRPAFFEERRRRQTVPTVAGAGWVNAYRYFSDSN
HHHCCHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHEECCCC
IWPRGLPLDHIQRAVPEWEALPVGDVDSPIQQGLADENPDVDAIYRLALTLPQNFRTDRT
CCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCE
VAFGEGAWCPFNSQNTSWWPDAFPLMYLPATCNFRVTDIWRSLIAQRIAWQNGWHILFHG
EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCCEEEEEC
PTVWQDRNEHDLMADFEDEIPGYLNNHRIRLMLEQLPLQGGVANIAHDLHRCYEAMLGLG
CEECCCCCCCCCCCCHHHHCCCCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LVTAAEMTLLEAWIEDIQRVG
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA