Click here to switch to the map view.

The map label for this gene is 86748544

Identifier: 86748544

GI number: 86748544

Start: 1607510

End: 1608175

Strand: Direct

Name: 86748544

Synonym: RPB_1419

Alternate gene names: NA

Gene position: 1607510-1608175 (Clockwise)

Preceding gene: 86748543

Following gene: 86748545

Centisome position: 30.15

GC content: 67.42

Gene sequence:

>666_bases
ATGGCCCCTGGATCGACCGTCCGCCGTTTCCTGCCGCGCGTGGCCCTTGTTGCCGCGCTGCTTCCGTTCGCCGCGCACGC
TCAGGCTCCTGCGCCGGACAGTCAGCCTCCGAAGCACCACCTCGACAAGCCGCTGGAGCAGCCGCCGGCTCCGCCGGCGA
AGCTGCCGCGCGTCGGCGGCGATCAGGTCAAGGGGCTGGATTTTCTGTTCGGCGCGCTGAAGGCGGCGCCCGACGAGGCC
AGCGCCAAGCACGTCGAGGCCCGCATCTGGGCGCTGTGGAGCCAGACCTCCAGCGACACCACGGCGCTGCTGATGTCGCG
GGCGAAGGTCGCGATGGAGGCCAAGCAATTCGATGTCGCGGTGAAGCTGCTCGATGCCGTGGTCAAGCTCCGGCCCGACT
ATATCGAGGGCTGGAATCGCCGCGCCACCATCTTCTACCTGCAGAACGAATATGCCCGCTCGCTCGGCGACATCGAGCAG
GTGCTGGCGCGCGAGCCGCGCCATTTCGGCGCGCTGGCCGGACTCGGCATGATCATGCAGGAGCTCGGCGACGACAAGCG
TGCACTCGACGCGTTTCGCAAGGCGCTGGCGATCAACCCGCATCTCGACAAGGTGCCCGATCTCGTGAAGACGCTGACGG
AAAAGGTCGAGGGCCGCGATATCTGA

Upstream 100 bases:

>100_bases
CGCGCGGGCGGGCTTTATCCGCCACCGCTGGTTGCTCCATCACGCCTGTGTGACGCGCGCGCTGCTTTGCAGCGCGTTGT
CCTGCGTCTAGAGTCCGCGG

Downstream 100 bases:

>100_bases
GCGGGACGACGAAACATTCGCGCGCGCACCGCGTAACTCACCCGTGCGAAAAATCTCCCGGGTCCCGTCCATGATCGCAA
TCGGCGCTGTCGCCATGCTC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAPGSTVRRFLPRVALVAALLPFAAHAQAPAPDSQPPKHHLDKPLEQPPAPPAKLPRVGGDQVKGLDFLFGALKAAPDEA
SAKHVEARIWALWSQTSSDTTALLMSRAKVAMEAKQFDVAVKLLDAVVKLRPDYIEGWNRRATIFYLQNEYARSLGDIEQ
VLAREPRHFGALAGLGMIMQELGDDKRALDAFRKALAINPHLDKVPDLVKTLTEKVEGRDI

Sequences:

>Translated_221_residues
MAPGSTVRRFLPRVALVAALLPFAAHAQAPAPDSQPPKHHLDKPLEQPPAPPAKLPRVGGDQVKGLDFLFGALKAAPDEA
SAKHVEARIWALWSQTSSDTTALLMSRAKVAMEAKQFDVAVKLLDAVVKLRPDYIEGWNRRATIFYLQNEYARSLGDIEQ
VLAREPRHFGALAGLGMIMQELGDDKRALDAFRKALAINPHLDKVPDLVKTLTEKVEGRDI
>Mature_220_residues
APGSTVRRFLPRVALVAALLPFAAHAQAPAPDSQPPKHHLDKPLEQPPAPPAKLPRVGGDQVKGLDFLFGALKAAPDEAS
AKHVEARIWALWSQTSSDTTALLMSRAKVAMEAKQFDVAVKLLDAVVKLRPDYIEGWNRRATIFYLQNEYARSLGDIEQV
LAREPRHFGALAGLGMIMQELGDDKRALDAFRKALAINPHLDKVPDLVKTLTEKVEGRDI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24262; Mature: 24131

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPGSTVRRFLPRVALVAALLPFAAHAQAPAPDSQPPKHHLDKPLEQPPAPPAKLPRVGG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
DQVKGLDFLFGALKAAPDEASAKHVEARIWALWSQTSSDTTALLMSRAKVAMEAKQFDVA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VKLLDAVVKLRPDYIEGWNRRATIFYLQNEYARSLGDIEQVLAREPRHFGALAGLGMIMQ
HHHHHHHHHHCCHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ELGDDKRALDAFRKALAINPHLDKVPDLVKTLTEKVEGRDI
HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
APGSTVRRFLPRVALVAALLPFAAHAQAPAPDSQPPKHHLDKPLEQPPAPPAKLPRVGG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
DQVKGLDFLFGALKAAPDEASAKHVEARIWALWSQTSSDTTALLMSRAKVAMEAKQFDVA
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VKLLDAVVKLRPDYIEGWNRRATIFYLQNEYARSLGDIEQVLAREPRHFGALAGLGMIMQ
HHHHHHHHHHCCHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ELGDDKRALDAFRKALAINPHLDKVPDLVKTLTEKVEGRDI
HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA