Click here to switch to the map view.

The map label for this gene is phyR [H]

Identifier: 86748513

GI number: 86748513

Start: 1579445

End: 1580251

Strand: Direct

Name: phyR [H]

Synonym: RPB_1388

Alternate gene names: 86748513

Gene position: 1579445-1580251 (Clockwise)

Preceding gene: 86748510

Following gene: 86748514

Centisome position: 29.62

GC content: 62.7

Gene sequence:

>807_bases
ATGTCGAGATCGCAGTTGGTTGCTGAGCATTTACCGTTGTTGCGCCGCTATGCGCGGGCTTTGACCGGCAACCAGGCGTC
GGGTGACGCCTATGTCGGCGCAATGCTTGAAGCGCTGCTTCAGGATCCGGCGTTGCTCGACGAAAGGCACGGTCCGCGGG
CGGGGCTTTTTCGTCTGTTCGCTCAGATCTGGAACTCGGTGGCGCTCAACGACGATTCCGAGGTTCGCTCGCTGCCGATG
CCCTCCGAGCGTCGGCTCTCGGCGATCACCCCGCTGCCGCGGCAGGCCTTCCTGCTGCTCTCGCTGGAAGGGTTTTCTGA
AGAAGAAGTCGCCTTCGTTCTTCACACCGATGTCGGCGAAATCCGTCAGCTCGCCGATACGGCCGGCCGGGAGATGGCCG
AGGAGATCGCCACCGACGTTCTGATCATCGAGGACGAGACCTTCATTGCGATGGATCTCGAAAGCCTCGTCAAGAACCTC
GGCCACAATGTCATTGGCGTTGCACGCACTCACGCTGACGCGATCGCCCTGGCGCGCACCAAGAAGCCGGGGCTGATCCT
CGCAGACATCCAGCTTGCCGACGGCAGTTCCGGTCTGGATGCCGTCAACGAATTGCTGAAGACGTTCGAGGTGCCGGTGG
TGTTCATCACGGCCTATCCGGAGCGTTTCCTGACCGGCGAACGCCCCGAGCCGGCGTTCCTGATCTCGAAGCCGTTCCAG
CCCGCGATGGTGTCCGCCGTTGCGAGTCAGGCCCTGTTCTTCCAGCGCAATTCGCGCAACCGGACCCCGAACGCCGCCGC
ATCCTGA

Upstream 100 bases:

>100_bases
GGTCGAATGGAACTTTTCCGCCGCTCCGGCGTAGGTAGGCTCAGGGAGCTCGGCCGCCCTGCCGATACCGGCCGAGACCA
GATTCGAGATTGGAGTGGGG

Downstream 100 bases:

>100_bases
CGCGCTACTCGCGTCTCACCATGGGTCGACAGGGAGCCGCTCGCGCCACTGCGCGGGCGGCTTTTGTTCGTTCGTGCGCT
GGTTTCCGCCCATCATATCG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSRSQLVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDPALLDERHGPRAGLFRLFAQIWNSVALNDDSEVRSLPM
PSERRLSAITPLPRQAFLLLSLEGFSEEEVAFVLHTDVGEIRQLADTAGREMAEEIATDVLIIEDETFIAMDLESLVKNL
GHNVIGVARTHADAIALARTKKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKPFQ
PAMVSAVASQALFFQRNSRNRTPNAAAS

Sequences:

>Translated_268_residues
MSRSQLVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDPALLDERHGPRAGLFRLFAQIWNSVALNDDSEVRSLPM
PSERRLSAITPLPRQAFLLLSLEGFSEEEVAFVLHTDVGEIRQLADTAGREMAEEIATDVLIIEDETFIAMDLESLVKNL
GHNVIGVARTHADAIALARTKKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKPFQ
PAMVSAVASQALFFQRNSRNRTPNAAAS
>Mature_267_residues
SRSQLVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDPALLDERHGPRAGLFRLFAQIWNSVALNDDSEVRSLPMP
SERRLSAITPLPRQAFLLLSLEGFSEEEVAFVLHTDVGEIRQLADTAGREMAEEIATDVLIIEDETFIAMDLESLVKNLG
HNVIGVARTHADAIALARTKKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKPFQP
AMVSAVASQALFFQRNSRNRTPNAAAS

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29301; Mature: 29170

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSQLVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDPALLDERHGPRAGLFRLF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHH
AQIWNSVALNDDSEVRSLPMPSERRLSAITPLPRQAFLLLSLEGFSEEEVAFVLHTDVGE
HHHHHHCCCCCCHHHHCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCHHH
IRQLADTAGREMAEEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHADAIALART
HHHHHHHHHHHHHHHHHHCEEEEECCCEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHC
KKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKPFQ
CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCCEEECCCCC
PAMVSAVASQALFFQRNSRNRTPNAAAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SRSQLVAEHLPLLRRYARALTGNQASGDAYVGAMLEALLQDPALLDERHGPRAGLFRLF
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHH
AQIWNSVALNDDSEVRSLPMPSERRLSAITPLPRQAFLLLSLEGFSEEEVAFVLHTDVGE
HHHHHHCCCCCCHHHHCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCHHH
IRQLADTAGREMAEEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHADAIALART
HHHHHHHHHHHHHHHHHHCEEEEECCCEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHC
KKPGLILADIQLADGSSGLDAVNELLKTFEVPVVFITAYPERFLTGERPEPAFLISKPFQ
CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCCEEECCCCC
PAMVSAVASQALFFQRNSRNRTPNAAAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA