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The map label for this gene is exbD [H]

Identifier: 86748367

GI number: 86748367

Start: 1421316

End: 1421756

Strand: Direct

Name: exbD [H]

Synonym: RPB_1242

Alternate gene names: 86748367

Gene position: 1421316-1421756 (Clockwise)

Preceding gene: 86748366

Following gene: 86748368

Centisome position: 26.66

GC content: 68.93

Gene sequence:

>441_bases
ATGGGCGTGCGACTCGGGGCGAGGCGGCGGCAGGGCGCCGAGGACGATCTCGCCGTCGCGCACGAGATCAACGTCACGCC
GTTCATCGACGTGATGCTGGTGCTGCTGATCATCTTCATGGTCGCAGCGCCGCTCGCCACCGTCGATCTCGGCGTCGACC
TGCCGGCCTCGACCGCGGTGCCGCAGCCGCGGCCGGACAAGCCGGTGTATCTCACGCTGCAATCCGATCTCACGCTGGCG
ATCGGTGAGTCTCCCGTCACCCGCGACGCGCTCGACGGCGCGCTGCAGAGCGCGACCGGCGGCAACAGGGACGAACGCAT
CTTCCTGCGCGCCGACAAGGCGGTCAGCTATGGCGACCTGATGGCGGTGATGAACCTGCTGCGCAACGCCGGCTATCTCA
AGGTCGCGCTCGTCGGCCTCGACGGCCGGGACGCACCATGA

Upstream 100 bases:

>100_bases
TCGCGCGCTGCTCGGCGACGCCTCGGCGCAGGTGCTGCTGCTGGTCAGCCGCGACCGCGGCCGCTCGGCGCGGCTGATGG
CGCGAGCCGCGGAGTAGGCG

Downstream 100 bases:

>100_bases
ACGCGTTCGCGCTGCACGAGCCGCCCGGCAAAGGCCGCGCCTCGCAATGGCTGCTGTCGGCGGCGGCGATCGTCGCCGCG
CATCTGGGCCTGATCGCTGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MGVRLGARRRQGAEDDLAVAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPASTAVPQPRPDKPVYLTLQSDLTLA
IGESPVTRDALDGALQSATGGNRDERIFLRADKAVSYGDLMAVMNLLRNAGYLKVALVGLDGRDAP

Sequences:

>Translated_146_residues
MGVRLGARRRQGAEDDLAVAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPASTAVPQPRPDKPVYLTLQSDLTLA
IGESPVTRDALDGALQSATGGNRDERIFLRADKAVSYGDLMAVMNLLRNAGYLKVALVGLDGRDAP
>Mature_145_residues
GVRLGARRRQGAEDDLAVAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPASTAVPQPRPDKPVYLTLQSDLTLAI
GESPVTRDALDGALQSATGGNRDERIFLRADKAVSYGDLMAVMNLLRNAGYLKVALVGLDGRDAP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=125, Percent_Identity=62.4, Blast_Score=160, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15536; Mature: 15405

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVRLGARRRQGAEDDLAVAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPASTAV
CCCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCC
PQPRPDKPVYLTLQSDLTLAIGESPVTRDALDGALQSATGGNRDERIFLRADKAVSYGDL
CCCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHH
MAVMNLLRNAGYLKVALVGLDGRDAP
HHHHHHHHCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
GVRLGARRRQGAEDDLAVAHEINVTPFIDVMLVLLIIFMVAAPLATVDLGVDLPASTAV
CCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCC
PQPRPDKPVYLTLQSDLTLAIGESPVTRDALDGALQSATGGNRDERIFLRADKAVSYGDL
CCCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHH
MAVMNLLRNAGYLKVALVGLDGRDAP
HHHHHHHHCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]