Click here to switch to the map view.

The map label for this gene is yliB [C]

Identifier: 86748351

GI number: 86748351

Start: 1403317

End: 1404927

Strand: Direct

Name: yliB [C]

Synonym: RPB_1226

Alternate gene names: 86748351

Gene position: 1403317-1404927 (Clockwise)

Preceding gene: 86748340

Following gene: 86748353

Centisome position: 26.32

GC content: 64.25

Gene sequence:

>1611_bases
ATGATCGAAACGTCGCATTGGCTGCGTTCAGTAGCTGCGTCGAAATTCGCGCTGCCGGCGCTGGCGCTCGCAGCTTCGCT
GACACTGCCCGCGTTTGCCGATGCCAAGACCATTCAAGCGGTGATGCATTCCGATCTGCGCGTCACCGATCCCGGTCTGA
CGACCGCCTACATCACGCGTGACCATGGCTACATGGTTTACGACACGTTGCTGGCGATGGACTCCAACTTCAAAGTCCAG
CCGCAGATGGCGGAGTGGAAGGTCTCCGACGACAAGCTGACCTACACGTTCACGTTGCGCGACGGCCTGAAATGGCACGA
CGGCAAGCCGGTCACCGCCGAGGATTGCGTCGCGTCGCTGAAGCGCTGGGGCCAGAAGGACGGCATGGGCCAGAAGCTGA
TGGACTTCACGGCCAGCCTTGAGGCTACCGATGCCAAGACCATCACGCTGAAGCTGAAGGAGCCCTACGGCCTGGTGCTC
GAATCGATCGGCAAGCCGTCTTCGCTGGTGCCGTTCATGATGCCGAAGCGTCTGGCCGAAACCTCGCCCGACAAGGCGAT
CCCCGAGCAGATCGGGTCCGGTCCGTTCAAGTTCGTCGCGGCCGAATTCCAGCCGGGCGTCAAGGCGGTGTACGTCAAGA
ACACCGACTACGTGCCGCGCAAGGAGGCGCCGAGCTGGACCTCGGGCGGCAAGGTCGTGAAGGTCGACCGTGTCGAATGG
ATCACCATGCCGGATGCGCAGACCGCGGTGAACGCGCTGCAGTCCGGCGACATCGATTTCATCGAGGCCCCGTCCTTCGA
CATGCTGCCGGTGCTGAAGGCCGACAAGGAGCTGACGATTCAGACGCTCAGTCCGCTCGGCTTCCAGACGCTCGGCCGGA
TGAACTTCCTGTATCCGCCGTTCGACAACCTCAAGGTCCGCCGCGCCGCGTTCCTGGCGTTGAGCCAGAAGCCGGTGCTC
GACGCGCTGGTCGGCAATCCCGATTACTACATCGTCTGCGGTGCCGTGTTCGGTTGCGGCACACCCTTGGCCTCCGACGT
CGGCTCCGAGTCCCTGGTGAAGGGCAACGGCATGGCCGAGGCCAAGAAGCTGCTCGCCGAGTCCGGCTATGACGGCACCC
CGATCGCGCTGATGGCGCCGGGCGACGTGGTCTCGCTCAAGGCCCAGCCGATCGTTGCGGCGCAACTCCTGCGCGAGGCC
GGCTTCAAGGTCGACGTTCAGGCCACCGACTGGCAGACAGTGGTGACGCGGCGCGCCAGCCAGAAGCCGCCCGCGGAAGG
CGGCTGGAACATGTTCTTCACCAATTGGGCCGGCCCGGACATTCTCAACCCGATCGCCAACGTCTCGACCGGCGGCCGGG
GCAAGAACGGCGGCTGGTTCGGCTGGCCGGAGGACGCCAAGATCGAAGAGCTGCGCGACAAGTTCGCCCGCTCGACCTCG
CCGGAGGAGCAGAAGAAGCTCGCCGCGGAGATCCAGAAGGAGGTCTACGACAAGGTGATCTACATCCCGCTCGGGCAATA
CAAGTCGCCGAGCGTGTGGCGGAAGGATCTGACCGGCGTGCTCACCGGCCCGGCGACCCCGGTGTTCTGGAACATCGACA
AGAAGGAGTAG

Upstream 100 bases:

>100_bases
TGTTGCGGCGCGCAATGCGTGAGCCCTGATGCCCTATCGTCTCTCACACTGCCCAAGCAATCATCTGCGTTTGGTCAGTT
TCACGCCAGGAGAAATCAGG

Downstream 100 bases:

>100_bases
GCGCGGCCGCAGCCGCGGTTCTTGCATCGTTTTGTCGACACCAGCTTCGCCGTCCCGCTCCCGCGGGGCGGCGAATTGCC
GAGAAGAGCCGGAGGGCTTT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MIETSHWLRSVAASKFALPALALAASLTLPAFADAKTIQAVMHSDLRVTDPGLTTAYITRDHGYMVYDTLLAMDSNFKVQ
PQMAEWKVSDDKLTYTFTLRDGLKWHDGKPVTAEDCVASLKRWGQKDGMGQKLMDFTASLEATDAKTITLKLKEPYGLVL
ESIGKPSSLVPFMMPKRLAETSPDKAIPEQIGSGPFKFVAAEFQPGVKAVYVKNTDYVPRKEAPSWTSGGKVVKVDRVEW
ITMPDAQTAVNALQSGDIDFIEAPSFDMLPVLKADKELTIQTLSPLGFQTLGRMNFLYPPFDNLKVRRAAFLALSQKPVL
DALVGNPDYYIVCGAVFGCGTPLASDVGSESLVKGNGMAEAKKLLAESGYDGTPIALMAPGDVVSLKAQPIVAAQLLREA
GFKVDVQATDWQTVVTRRASQKPPAEGGWNMFFTNWAGPDILNPIANVSTGGRGKNGGWFGWPEDAKIEELRDKFARSTS
PEEQKKLAAEIQKEVYDKVIYIPLGQYKSPSVWRKDLTGVLTGPATPVFWNIDKKE

Sequences:

>Translated_536_residues
MIETSHWLRSVAASKFALPALALAASLTLPAFADAKTIQAVMHSDLRVTDPGLTTAYITRDHGYMVYDTLLAMDSNFKVQ
PQMAEWKVSDDKLTYTFTLRDGLKWHDGKPVTAEDCVASLKRWGQKDGMGQKLMDFTASLEATDAKTITLKLKEPYGLVL
ESIGKPSSLVPFMMPKRLAETSPDKAIPEQIGSGPFKFVAAEFQPGVKAVYVKNTDYVPRKEAPSWTSGGKVVKVDRVEW
ITMPDAQTAVNALQSGDIDFIEAPSFDMLPVLKADKELTIQTLSPLGFQTLGRMNFLYPPFDNLKVRRAAFLALSQKPVL
DALVGNPDYYIVCGAVFGCGTPLASDVGSESLVKGNGMAEAKKLLAESGYDGTPIALMAPGDVVSLKAQPIVAAQLLREA
GFKVDVQATDWQTVVTRRASQKPPAEGGWNMFFTNWAGPDILNPIANVSTGGRGKNGGWFGWPEDAKIEELRDKFARSTS
PEEQKKLAAEIQKEVYDKVIYIPLGQYKSPSVWRKDLTGVLTGPATPVFWNIDKKE
>Mature_536_residues
MIETSHWLRSVAASKFALPALALAASLTLPAFADAKTIQAVMHSDLRVTDPGLTTAYITRDHGYMVYDTLLAMDSNFKVQ
PQMAEWKVSDDKLTYTFTLRDGLKWHDGKPVTAEDCVASLKRWGQKDGMGQKLMDFTASLEATDAKTITLKLKEPYGLVL
ESIGKPSSLVPFMMPKRLAETSPDKAIPEQIGSGPFKFVAAEFQPGVKAVYVKNTDYVPRKEAPSWTSGGKVVKVDRVEW
ITMPDAQTAVNALQSGDIDFIEAPSFDMLPVLKADKELTIQTLSPLGFQTLGRMNFLYPPFDNLKVRRAAFLALSQKPVL
DALVGNPDYYIVCGAVFGCGTPLASDVGSESLVKGNGMAEAKKLLAESGYDGTPIALMAPGDVVSLKAQPIVAAQLLREA
GFKVDVQATDWQTVVTRRASQKPPAEGGWNMFFTNWAGPDILNPIANVSTGGRGKNGGWFGWPEDAKIEELRDKFARSTS
PEEQKKLAAEIQKEVYDKVIYIPLGQYKSPSVWRKDLTGVLTGPATPVFWNIDKKE

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=536, Percent_Identity=25, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1789887, Length=487, Percent_Identity=22.7926078028747, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789966, Length=333, Percent_Identity=25.2252252252252, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787762, Length=466, Percent_Identity=23.3905579399142, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787495, Length=467, Percent_Identity=25.4817987152034, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081878, Length=463, Percent_Identity=22.8941684665227, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58665; Mature: 58665

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETSHWLRSVAASKFALPALALAASLTLPAFADAKTIQAVMHSDLRVTDPGLTTAYITR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEECCCCEEEEEEC
DHGYMVYDTLLAMDSNFKVQPQMAEWKVSDDKLTYTFTLRDGLKWHDGKPVTAEDCVASL
CCCEEEEEEHHHCCCCCEECCCHHCEEECCCEEEEEEEECCCCEECCCCCCCHHHHHHHH
KRWGQKDGMGQKLMDFTASLEATDAKTITLKLKEPYGLVLESIGKPSSLVPFMMPKRLAE
HHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHH
TSPDKAIPEQIGSGPFKFVAAEFQPGVKAVYVKNTDYVPRKEAPSWTSGGKVVKVDRVEW
CCCCHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEE
ITMPDAQTAVNALQSGDIDFIEAPSFDMLPVLKADKELTIQTLSPLGFQTLGRMNFLYPP
EECCCHHHHHHHHHCCCCCEEECCCCCCCHHCCCCCCEEEEECCCCCHHHHCCCCCCCCC
FDNLKVRRAAFLALSQKPVLDALVGNPDYYIVCGAVFGCGTPLASDVGSESLVKGNGMAE
CCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEHHCCCCCHHHHCCCCCEECCCCHHH
AKKLLAESGYDGTPIALMAPGDVVSLKAQPIVAAQLLREAGFKVDVQATDWQTVVTRRAS
HHHHHHHCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHC
QKPPAEGGWNMFFTNWAGPDILNPIANVSTGGRGKNGGWFGWPEDAKIEELRDKFARSTS
CCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
PEEQKKLAAEIQKEVYDKVIYIPLGQYKSPSVWRKDLTGVLTGPATPVFWNIDKKE
HHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHCCEEECCCCCCEEEECCCCC
>Mature Secondary Structure
MIETSHWLRSVAASKFALPALALAASLTLPAFADAKTIQAVMHSDLRVTDPGLTTAYITR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEECCCCEEEEEEC
DHGYMVYDTLLAMDSNFKVQPQMAEWKVSDDKLTYTFTLRDGLKWHDGKPVTAEDCVASL
CCCEEEEEEHHHCCCCCEECCCHHCEEECCCEEEEEEEECCCCEECCCCCCCHHHHHHHH
KRWGQKDGMGQKLMDFTASLEATDAKTITLKLKEPYGLVLESIGKPSSLVPFMMPKRLAE
HHCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHH
TSPDKAIPEQIGSGPFKFVAAEFQPGVKAVYVKNTDYVPRKEAPSWTSGGKVVKVDRVEW
CCCCHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEE
ITMPDAQTAVNALQSGDIDFIEAPSFDMLPVLKADKELTIQTLSPLGFQTLGRMNFLYPP
EECCCHHHHHHHHHCCCCCEEECCCCCCCHHCCCCCCEEEEECCCCCHHHHCCCCCCCCC
FDNLKVRRAAFLALSQKPVLDALVGNPDYYIVCGAVFGCGTPLASDVGSESLVKGNGMAE
CCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEEHHCCCCCHHHHCCCCCEECCCCHHH
AKKLLAESGYDGTPIALMAPGDVVSLKAQPIVAAQLLREAGFKVDVQATDWQTVVTRRAS
HHHHHHHCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHC
QKPPAEGGWNMFFTNWAGPDILNPIANVSTGGRGKNGGWFGWPEDAKIEELRDKFARSTS
CCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
PEEQKKLAAEIQKEVYDKVIYIPLGQYKSPSVWRKDLTGVLTGPATPVFWNIDKKE
HHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHCCEEECCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]