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The map label for this gene is yliD [C]

Identifier: 86748348

GI number: 86748348

Start: 1399913

End: 1400803

Strand: Reverse

Name: yliD [C]

Synonym: RPB_1223

Alternate gene names: 86748348

Gene position: 1400803-1399913 (Counterclockwise)

Preceding gene: 86748349

Following gene: 86748347

Centisome position: 26.27

GC content: 66.89

Gene sequence:

>891_bases
ATGGCCATCGATAGTCTCCCCGAATCCTCGATTCCGATCACCCGACCGTTCGGGCAGAGGTTCGAATTTCTGTACTCCAG
CCCGATCATCGCCGCGGCCTCGATCTGCCTGGCGCTGGTCGTCGCCTCGGCGGTGTTCGCGCCGTTGCTGGCGCCGCACG
ATCCGATGCTGCTGGCGCCGGCGCAGCGGCTGAAGCCGGCGAGCGCCGAATTCCTGCTCGGCACCGACGCCTACGGCCGC
GACGTGCTGTCGCGCATTCTCTACGGCGGCCGGATCTCGCTGATGATCGGCGTCGGCGCCGCGATCGTCAGTATCGCGAT
CGGCCTCGTCATCGGCCTGGTCTCCGGCTTCTTCAAATGGATCGACGCCGTGATGATGCGGCTGATGGACGGCCTGATGG
CGATCCCGAGCATCCTGCTGGCGATCGCCGTGGTGTCGCTGTCGGGCGCTAGTCTGGCCACGGTGCTGATCGCGATCACC
ATCCCGGAAATCCCGCGCGTCGCCCGGCTGGTGCGCTCGGTGGTGCTGTCGGCGCGCGAGGAGCCTTATGTCGAGGCGGC
GATTTCGCTCGGCTCCAGCCTGCCCAAGATCATGGTGAGGCATCTGTTGCCGAACACCATCGCGCCCCTGATCGTGCAGG
GCACCTATATCTGCGCCTCCGCGATCCTGACCGAAGCGATCCTGTCGTTCCTCGGCGCCGGCATCAGCCCGGAGACGCCG
ACCTGGGGCAACATCATGGCCGAGGGCCGCGCGCTGTTCCAGATCAAGCCGTCGCTGATCTTCTGGCCCGGCGTGCTGCT
GTCGATCGCGATCCTCAGCGTCAACCTGATCGGCGACGCCGCCCGCGACGCGCTCGATCCGCGGATGAAACAGCGGGAGG
GCGCGCGATGA

Upstream 100 bases:

>100_bases
TGATCCTGCTGACCTCGGGCATCTATGTCGCCGTCAACCTGCTGATCGACGTGGCCTACACGCTGCTCGACCCGCGGATC
AGATATTAGAGGCGCGCGCG

Downstream 100 bases:

>100_bases
CAACGAGCGACGCACGATCAGATTCTGCACATGCCCTGCTGAGCGCACCGCCCTCACCTCTCCCCGCGCGCGGGGAGAGG
TCGACAGGCTTCGCTGTGCG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MAIDSLPESSIPITRPFGQRFEFLYSSPIIAAASICLALVVASAVFAPLLAPHDPMLLAPAQRLKPASAEFLLGTDAYGR
DVLSRILYGGRISLMIGVGAAIVSIAIGLVIGLVSGFFKWIDAVMMRLMDGLMAIPSILLAIAVVSLSGASLATVLIAIT
IPEIPRVARLVRSVVLSAREEPYVEAAISLGSSLPKIMVRHLLPNTIAPLIVQGTYICASAILTEAILSFLGAGISPETP
TWGNIMAEGRALFQIKPSLIFWPGVLLSIAILSVNLIGDAARDALDPRMKQREGAR

Sequences:

>Translated_296_residues
MAIDSLPESSIPITRPFGQRFEFLYSSPIIAAASICLALVVASAVFAPLLAPHDPMLLAPAQRLKPASAEFLLGTDAYGR
DVLSRILYGGRISLMIGVGAAIVSIAIGLVIGLVSGFFKWIDAVMMRLMDGLMAIPSILLAIAVVSLSGASLATVLIAIT
IPEIPRVARLVRSVVLSAREEPYVEAAISLGSSLPKIMVRHLLPNTIAPLIVQGTYICASAILTEAILSFLGAGISPETP
TWGNIMAEGRALFQIKPSLIFWPGVLLSIAILSVNLIGDAARDALDPRMKQREGAR
>Mature_295_residues
AIDSLPESSIPITRPFGQRFEFLYSSPIIAAASICLALVVASAVFAPLLAPHDPMLLAPAQRLKPASAEFLLGTDAYGRD
VLSRILYGGRISLMIGVGAAIVSIAIGLVIGLVSGFFKWIDAVMMRLMDGLMAIPSILLAIAVVSLSGASLATVLIAITI
PEIPRVARLVRSVVLSAREEPYVEAAISLGSSLPKIMVRHLLPNTIAPLIVQGTYICASAILTEAILSFLGAGISPETPT
WGNIMAEGRALFQIKPSLIFWPGVLLSIAILSVNLIGDAARDALDPRMKQREGAR

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=293, Percent_Identity=37.2013651877133, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787760, Length=282, Percent_Identity=35.1063829787234, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=38.8235294117647, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=34.297520661157, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787498, Length=272, Percent_Identity=33.8235294117647, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787549, Length=260, Percent_Identity=35.3846153846154, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1788505, Length=229, Percent_Identity=33.6244541484716, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31303; Mature: 31172

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDSLPESSIPITRPFGQRFEFLYSSPIIAAASICLALVVASAVFAPLLAPHDPMLLAP
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
AQRLKPASAEFLLGTDAYGRDVLSRILYGGRISLMIGVGAAIVSIAIGLVIGLVSGFFKW
HHHCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDAVMMRLMDGLMAIPSILLAIAVVSLSGASLATVLIAITIPEIPRVARLVRSVVLSARE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
EPYVEAAISLGSSLPKIMVRHLLPNTIAPLIVQGTYICASAILTEAILSFLGAGISPETP
CHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TWGNIMAEGRALFQIKPSLIFWPGVLLSIAILSVNLIGDAARDALDPRMKQREGAR
CCCHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC
>Mature Secondary Structure 
AIDSLPESSIPITRPFGQRFEFLYSSPIIAAASICLALVVASAVFAPLLAPHDPMLLAP
CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
AQRLKPASAEFLLGTDAYGRDVLSRILYGGRISLMIGVGAAIVSIAIGLVIGLVSGFFKW
HHHCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDAVMMRLMDGLMAIPSILLAIAVVSLSGASLATVLIAITIPEIPRVARLVRSVVLSARE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
EPYVEAAISLGSSLPKIMVRHLLPNTIAPLIVQGTYICASAILTEAILSFLGAGISPETP
CHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TWGNIMAEGRALFQIKPSLIFWPGVLLSIAILSVNLIGDAARDALDPRMKQREGAR
CCCHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]