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The map label for this gene is yliC [C]

Identifier: 86748349

GI number: 86748349

Start: 1400815

End: 1401756

Strand: Reverse

Name: yliC [C]

Synonym: RPB_1224

Alternate gene names: 86748349

Gene position: 1401756-1400815 (Counterclockwise)

Preceding gene: 86748350

Following gene: 86748348

Centisome position: 26.29

GC content: 65.92

Gene sequence:

>942_bases
ATGCTCGGCTATCTGATCCGCCGCATTCTCGCAGCGATTCCGGTGATGGGCGTGGTTGCGCTCGTCGTCTTCCTGCTGCT
GCGGCTGACGCCGGGCGATCCGGCCGCGATCCTCGCCGGCGACAACGCCTCGCCCGAACAACTCGCGCGCATCCGCGCGT
CGCTCGGCCTCAACGAACCGCTGTACATCCAGTTCGTCACCTGGGTCGGCAAGCTGCTGCACGGCGATCTCGGCGTCTCG
CTGATTTCGCAGGTGCCGGTGCTGAAGATGATCGGCCAGCGGATCGAGCCGACGCTGAGCGTCGCGATCGCCACCATCAT
CCTGTCGATCGTGGTCGCGGTGCCGCTCGGCGTCGTCGCCGCGTGGAAGCATGGCACCTGGGTCGACCGCTTCGTGATGG
GACTGTCGGTGATCGGCTTCTCGGTGCCGGTGTTCGTGATCGGCTATGTGCTGATCCAGATCTTCGCCATCGAGCTGCGC
TGGTTTCCGGTGCAGGGCTTCCGCACCATGGCGCGCGGCTTCGGGCCGTATTTCGAGCGGCTGGTGCTGCCGACGCTGAC
GCTGTCGTTCATCTATATCGCGCTGATCGCGCGGATGACCCGCGCGGCGATGCTCGACGTGCTCGGCGAGGACTATGTCC
GCACCGCGCGCGCCAAGGGCATCACCGAAAGCCGCGTGCTGCTGCGCCACGCATTGCGCAACGCCGCGGTGCCGGTGATC
ACCGTGATCGGCACCGGCTTCGCGCTGCTGATTTCCGGCGTCGTCGTCACCGAGAGCGTGTTCAACCTGCCCGGCATCGG
CCGCCTCACCGTGGACGCGGTGCTGGCGCGCGACTATCCCGTCATTCAAGGCATGATCCTGCTGACCTCGGGCATCTATG
TCGCCGTCAACCTGCTGATCGACGTGGCCTACACGCTGCTCGACCCGCGGATCAGATATTAG

Upstream 100 bases:

>100_bases
ATCACCGAACTTCGGTCACCGCAGGTCCAACGATAATGACGCACACCAGACTCCGAATAAATTCTGCTAATCGGCACTCT
GCATCAGCGATGGAGCTCCG

Downstream 100 bases:

>100_bases
AGGCGCGCGCGATGGCCATCGATAGTCTCCCCGAATCCTCGATTCCGATCACCCGACCGTTCGGGCAGAGGTTCGAATTT
CTGTACTCCAGCCCGATCAT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLGYLIRRILAAIPVMGVVALVVFLLLRLTPGDPAAILAGDNASPEQLARIRASLGLNEPLYIQFVTWVGKLLHGDLGVS
LISQVPVLKMIGQRIEPTLSVAIATIILSIVVAVPLGVVAAWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELR
WFPVQGFRTMARGFGPYFERLVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGITESRVLLRHALRNAAVPVI
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLIDVAYTLLDPRIRY

Sequences:

>Translated_313_residues
MLGYLIRRILAAIPVMGVVALVVFLLLRLTPGDPAAILAGDNASPEQLARIRASLGLNEPLYIQFVTWVGKLLHGDLGVS
LISQVPVLKMIGQRIEPTLSVAIATIILSIVVAVPLGVVAAWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELR
WFPVQGFRTMARGFGPYFERLVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGITESRVLLRHALRNAAVPVI
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLIDVAYTLLDPRIRY
>Mature_313_residues
MLGYLIRRILAAIPVMGVVALVVFLLLRLTPGDPAAILAGDNASPEQLARIRASLGLNEPLYIQFVTWVGKLLHGDLGVS
LISQVPVLKMIGQRIEPTLSVAIATIILSIVVAVPLGVVAAWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELR
WFPVQGFRTMARGFGPYFERLVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGITESRVLLRHALRNAAVPVI
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLIDVAYTLLDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=43.4504792332268, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=39.4658753709199, Blast_Score=248, Evalue=3e-67,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=39.3650793650794, Blast_Score=227, Evalue=6e-61,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=37.4603174603175, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=37.8048780487805, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=26.8698060941828, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=27.2058823529412, Blast_Score=130, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34055; Mature: 34055

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGYLIRRILAAIPVMGVVALVVFLLLRLTPGDPAAILAGDNASPEQLARIRASLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
LYIQFVTWVGKLLHGDLGVSLISQVPVLKMIGQRIEPTLSVAIATIILSIVVAVPLGVVA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELRWFPVQGFRTMARGFGPYFER
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCHHHHH
LVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGITESRVLLRHALRNAAVPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLI
HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DVAYTLLDPRIRY
HHHHHHHCCCCCC
>Mature Secondary Structure
MLGYLIRRILAAIPVMGVVALVVFLLLRLTPGDPAAILAGDNASPEQLARIRASLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC
LYIQFVTWVGKLLHGDLGVSLISQVPVLKMIGQRIEPTLSVAIATIILSIVVAVPLGVVA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AWKHGTWVDRFVMGLSVIGFSVPVFVIGYVLIQIFAIELRWFPVQGFRTMARGFGPYFER
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCHHHHH
LVLPTLTLSFIYIALIARMTRAAMLDVLGEDYVRTARAKGITESRVLLRHALRNAAVPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
TVIGTGFALLISGVVVTESVFNLPGIGRLTVDAVLARDYPVIQGMILLTSGIYVAVNLLI
HHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DVAYTLLDPRIRY
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]