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The map label for this gene is rpoE [H]

Identifier: 86747885

GI number: 86747885

Start: 852802

End: 853473

Strand: Direct

Name: rpoE [H]

Synonym: RPB_0759

Alternate gene names: 86747885

Gene position: 852802-853473 (Clockwise)

Preceding gene: 86747882

Following gene: 86747886

Centisome position: 16.0

GC content: 67.41

Gene sequence:

>672_bases
ATGGCGCACGCTCTCCACACCGAACCGGTCGACACGCTCGCAACGCCGCCGGCCGCATCGGCGACGCTCGCACCCGATGC
GATCGTGCCGCACGACCCTGACGCGCCGCGCGACATCGACGAAGAATTGCTGGACCGGCTCGCGGCGAACGACGAGGCGG
CGTTCAGGCTGCTGGTCGAGCGCCACATCGATCGCGCCTTCGGCATCGCGCTGCGCCTGCTCGGCAGCCGCGCCGACGCC
GAGGACGTGGTGCAGGACACGATGCTGAAAGTCTGGACCCATCGCGGCCGCTGGGAGCACGGCCGCGCCAAATTCTCGAC
CTGGCTGTACCGCGTCGTCACCAATCGCTGCATCGATCTGCATCGCCGTCCGCGCACCGACAATGTCGATGCCGTGCCCG
AGCCGGCCGACGCCAAGCCCGACGCCTGCAGCACCATGCAGCGCAACGAGATCACCCAATTGCTGGAAACCGCGATTCAG
AAACTGCCCGAGCAGCAGCGCGTCGCGGTGATCCTGTCGTATCACGAGAACATGAGTAACGGCGACATCGCCGAGGTGAT
GAGCACGACCGTCGCCGCGGTCGAGTCGCTGCTCAAGCGCGGGCGTCAGCAGCTCCGCGAGATCCTGCGGCGCCACGAGC
CGGACCTGCTGCAGGCGTTTACCGACTGCTAA

Upstream 100 bases:

>100_bases
AAATAAGTCGAAATTCTCCGACCGGATTTTCGGGGCGGCCCGTACAAACTTCACAGGCCGACCACACCGTCCGTTCGTCG
GCATAGGATTGGAGCAGGGG

Downstream 100 bases:

>100_bases
CCATAAATCGCCGGCCCGAGACAAACCCCGCCTGAATTCCGCGTGCCGTTCCGTTTAGCGGATGGACGGGGGCTGGCCTG
CGTCCGGTCGTCCCCCACTC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MAHALHTEPVDTLATPPAASATLAPDAIVPHDPDAPRDIDEELLDRLAANDEAAFRLLVERHIDRAFGIALRLLGSRADA
EDVVQDTMLKVWTHRGRWEHGRAKFSTWLYRVVTNRCIDLHRRPRTDNVDAVPEPADAKPDACSTMQRNEITQLLETAIQ
KLPEQQRVAVILSYHENMSNGDIAEVMSTTVAAVESLLKRGRQQLREILRRHEPDLLQAFTDC

Sequences:

>Translated_223_residues
MAHALHTEPVDTLATPPAASATLAPDAIVPHDPDAPRDIDEELLDRLAANDEAAFRLLVERHIDRAFGIALRLLGSRADA
EDVVQDTMLKVWTHRGRWEHGRAKFSTWLYRVVTNRCIDLHRRPRTDNVDAVPEPADAKPDACSTMQRNEITQLLETAIQ
KLPEQQRVAVILSYHENMSNGDIAEVMSTTVAAVESLLKRGRQQLREILRRHEPDLLQAFTDC
>Mature_222_residues
AHALHTEPVDTLATPPAASATLAPDAIVPHDPDAPRDIDEELLDRLAANDEAAFRLLVERHIDRAFGIALRLLGSRADAE
DVVQDTMLKVWTHRGRWEHGRAKFSTWLYRVVTNRCIDLHRRPRTDNVDAVPEPADAKPDACSTMQRNEITQLLETAIQK
LPEQQRVAVILSYHENMSNGDIAEVMSTTVAAVESLLKRGRQQLREILRRHEPDLLQAFTDC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=177, Percent_Identity=29.9435028248588, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 25117; Mature: 24985

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHALHTEPVDTLATPPAASATLAPDAIVPHDPDAPRDIDEELLDRLAANDEAAFRLLVE
CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
RHIDRAFGIALRLLGSRADAEDVVQDTMLKVWTHRGRWEHGRAKFSTWLYRVVTNRCIDL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
HRRPRTDNVDAVPEPADAKPDACSTMQRNEITQLLETAIQKLPEQQRVAVILSYHENMSN
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
GDIAEVMSTTVAAVESLLKRGRQQLREILRRHEPDLLQAFTDC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
AHALHTEPVDTLATPPAASATLAPDAIVPHDPDAPRDIDEELLDRLAANDEAAFRLLVE
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
RHIDRAFGIALRLLGSRADAEDVVQDTMLKVWTHRGRWEHGRAKFSTWLYRVVTNRCIDL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
HRRPRTDNVDAVPEPADAKPDACSTMQRNEITQLLETAIQKLPEQQRVAVILSYHENMSN
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
GDIAEVMSTTVAAVESLLKRGRQQLREILRRHEPDLLQAFTDC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]