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The map label for this gene is rlpA [C]

Identifier: 86747395

GI number: 86747395

Start: 303167

End: 303649

Strand: Direct

Name: rlpA [C]

Synonym: RPB_0269

Alternate gene names: 86747395

Gene position: 303167-303649 (Clockwise)

Preceding gene: 86747389

Following gene: 86747397

Centisome position: 5.69

GC content: 66.87

Gene sequence:

>483_bases
ATGACTAACGCTAAGAAGTCTCCGCCGGGAATCGTAACCCGGCCGCGCACCACGGCTGCGCTGATCGCCGCAACGGTGCT
GCTGAGCGGGGCAGCCATCACCGAAGCTTCGGCGCGGTCGAAGCAGAAGCACCATCATCAGCGCCATCACGTCCAGAACG
ACTGGCGCAACGCCAATGCCACGCTCGCAGAGGGCGGCGGCGGTCGCACGTTTTCGGGGGTCGCGTCCTACTACGGCAAT
GAATCCGGCAACCGCACCGCATCAGGCCAGCGCTTCAACGCCAGTGCGATGACGGCGGCCCATCGCAGCCTGCCGTTCGG
CACCAAGCTGCGCGTCACCCATGGCGGCCGCAGCGTCGTCGTCACCATCAATGATCGCGGTCCGTTCATTCGCGGCCGTG
TGCTCGACCTGTCGACCGGCGCCGCGCGCGCGATCGGTCTGACCAGCCGCGGGGTCGGCCGGGTCGTTGCGGAAGTGATG
TAA

Upstream 100 bases:

>100_bases
CGTCAATTTCTCGCCTCATTACGCAGCGAACGGTCTGCCATCGTAAACGGGACGGGGGTTCCACTTGCCGCGCATGTGGC
AATACTGAGGGCTTACATTT

Downstream 100 bases:

>100_bases
CCGCAGGACGCGGTTCGCTTCCCGGTCATCAAGACAAGCACTTCATCGATTAGGCCGCGATCGTCGCGAGCCCGAACTGC
AGCCTGCCGTCAGCGATGAC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTNAKKSPPGIVTRPRTTAALIAATVLLSGAAITEASARSKQKHHHQRHHVQNDWRNANATLAEGGGGRTFSGVASYYGN
ESGNRTASGQRFNASAMTAAHRSLPFGTKLRVTHGGRSVVVTINDRGPFIRGRVLDLSTGAARAIGLTSRGVGRVVAEVM

Sequences:

>Translated_160_residues
MTNAKKSPPGIVTRPRTTAALIAATVLLSGAAITEASARSKQKHHHQRHHVQNDWRNANATLAEGGGGRTFSGVASYYGN
ESGNRTASGQRFNASAMTAAHRSLPFGTKLRVTHGGRSVVVTINDRGPFIRGRVLDLSTGAARAIGLTSRGVGRVVAEVM
>Mature_159_residues
TNAKKSPPGIVTRPRTTAALIAATVLLSGAAITEASARSKQKHHHQRHHVQNDWRNANATLAEGGGGRTFSGVASYYGNE
SGNRTASGQRFNASAMTAAHRSLPFGTKLRVTHGGRSVVVTINDRGPFIRGRVLDLSTGAARAIGLTSRGVGRVVAEVM

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=74, Percent_Identity=47.2972972972973, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 16824; Mature: 16693

Theoretical pI: Translated: 12.36; Mature: 12.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNAKKSPPGIVTRPRTTAALIAATVLLSGAAITEASARSKQKHHHQRHHVQNDWRNANA
CCCCCCCCCCCEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TLAEGGGGRTFSGVASYYGNESGNRTASGQRFNASAMTAAHRSLPFGTKLRVTHGGRSVV
EEECCCCCCCHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHCCCCCCEEEEEECCCEEE
VTINDRGPFIRGRVLDLSTGAARAIGLTSRGVGRVVAEVM
EEECCCCCEEEEEEEECCCCCCEEECCCCCCHHHHHHHCC
>Mature Secondary Structure 
TNAKKSPPGIVTRPRTTAALIAATVLLSGAAITEASARSKQKHHHQRHHVQNDWRNANA
CCCCCCCCCCEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TLAEGGGGRTFSGVASYYGNESGNRTASGQRFNASAMTAAHRSLPFGTKLRVTHGGRSVV
EEECCCCCCCHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHCCCCCCEEEEEECCCEEE
VTINDRGPFIRGRVLDLSTGAARAIGLTSRGVGRVVAEVM
EEECCCCCEEEEEEEECCCCCCEEECCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]