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The map label for this gene is ydeP [H]

Identifier: 86747330

GI number: 86747330

Start: 228221

End: 230614

Strand: Direct

Name: ydeP [H]

Synonym: RPB_0204

Alternate gene names: 86747330

Gene position: 228221-230614 (Clockwise)

Preceding gene: 86747329

Following gene: 86747331

Centisome position: 4.28

GC content: 65.29

Gene sequence:

>2394_bases
GTGGCGAAGCAGCGGCCGGACGGCATCCGAGCGTACGAAGATCCCGCTGGCGGATGGGGCGCGCTGAAGGCACTCGCCGT
CGCGCTCAAGGATCAACAGCTCGTCGTCGAGGGCATTCCAACTCTGTTGAAGCAGAATCAGCCGGAAGGTTTCGATTGTC
CCGGCTGCGCCTGGCCCGATCCGAAGCACACCTCCGCGTTCGAGTTCTGCGAGAACGGGGCCAAGGCCGTGACCTGGGAG
TCGACGCCGAAGCGGGTCGGCCCGGACTTCTTTGCGCAGCATACGGTGACGTCGCTGTGGGAGTGCTCGGACTACTGGCT
CGAGGATCAGGGGCGGTTGACCCATCCGATGCGCTACGATGCGCAGACCGACAAATACGAGCCGGTCGACTGGCAGGTCG
CGTTCGACGACATCGCCGCCAAGCTCGATGCGCTCGACGATCCCAACCAGCTCGAGCTCTATACGTCCGGACGGGCGTCG
AACGAGGCGGCCTTCCTGTTCCAGTTGTTCGGCCGCCAGTTCGGCACCAACAACTTTCCGGATTGCTCGAACATGTGCCA
CGAGCCGACCTCGGTCGGGTTACCGCGCTCGATCGGCATCGGCAAGGGCACGGTCACGCTCGACGATTTCGACAAGGCCG
AGCTGATCATCTCGATGGGCCACAACCCCGGGACCAATCATCCGCGGATGATGACGCCGTTGCGCAATGCCTCGCGGCGC
GGCGTCAAGATCATCGTGCTCAATCCGCTGAAGGAGCGGGCGCTGGAGCGCTTCGAGGCGCCGCAGGCACCGCTCGAAAT
GGCGACGACATCGTCGACGCCGATCGCTTCCTGCTACTTCCAGGTCAAGGTCGGCGGTGATGCCGCAGCCCTGAAAGGCA
TCTGCAAGGCGCTGGTCGCCGCCGACAAGGTGGCGCGCGCCGCGGATCTTGCGCCCTTGCTCGACCACACTTTCATTGTT
GGCCACACCGCAGGCTTCGATGCCCTGGTCGACGATCTCGAAGGCTGCAGCTGGTCCGCCATCGAGCGGGCCAGCGGATT
GCCGCGCGCCGACATGGAGCGGATCGCGGCCGACTATGCGGCGTCGAACGCCACCATCGTGTGTTACGGCATGGGGATCA
CCCAACACGTCACCGGCACTGCGAATGTGCAGCAGATCGCCAATCTGCTGCTGCTCAAGGGCAATATCGGCAAACCCGGC
GCCGGGATTTGTCCGTTGCGCGGCCATTCCAACGTGCAGGGCGATCGCACCGTCGGCATCACCGAGCGCCCCTCGGAGGC
GTTTCTCGACCGGCTGCGCGACGTGTTCGGCTTCGAGCCGCCTCGGGCATTCGGCCATTCGGTGGTCGACAGTATCGCGG
CGATGCGCGACGGCCGCGCCAAGGCGGTGATCTGCCTCGGCGGCAATCTGGCGATGGCGGCATCGGACCCGCAGGCCTGC
TTCAAGGGATTTCGCCGCCTCGATCTCGCCGTGCACCTCGCCACCAAGCTCAACCGCACGCACCTGTTGACCAGCAAGAC
GACCTATCTGTTCCCGGTGCTCGGCCGCACCGACAGCGACATCCAGGCTTCGGGCCGCCAGGCGCTCACCGTCGAGGACT
CGATGTCGATGGTGCATGCCTCGCGCGGCTTCCTGACCCCGCCGAGCGATCAGGTGCGGTCCGAGGTTGCGATCCTGGCC
GGCATCGCCAAGGCGACGCTCAGAAGCAAGTCCAGGGTGGATTGGGATGCGCTGGCCGGCAATTACGATCTGATCCGCGA
CGCCATCGAAGAAGTGTTTCCGGATTTCGAGGCTTACAACGACCGCATCCGAAAGCCGGGTGGATTTCAGCTGCCGAATT
CGGCGGCGATGCGGATCTGGAACACGCCGACCGGCAAGGCCAATTTCGCGATCTTCGCGGGCCTCGAAGAAGACGAGACA
AGTACCGACCGCGATGTGCTGCGGATGACGTCGCTGCGCGCGCACGATCAGTACAACACCACGATCTATGGTCTGAACGA
CCGCTACCGTGGCGTGTTCGGCCGCCGCGACGTGCTGTTCCTCAATCCCAAGGACCTGGCGCGGCTCGGTTTTGCGGAAG
GCGACGTGGTCGATGTCGCCACCGCGCTGGACTACGCGCGGCCGGACCGCGTGGTGCAGGCGCTGACCCTGGTGAGCTAC
AATCTGCCGGACGGCTGCTGCGCCTCCTACTATCCCGAGATCCAGCCACTGGTGGCGCTCGAATTCCGCGATCCGGAGTG
CCTGACGCCGTCCTACAAATCGATCCCGGTGAAAGTCACGGCCGCGCGGGCGCCGCTCGCCGCTGACCGCGCGGTGGGGC
GTGACGGAATCGTCGGCCGCGAACCGGGCGTCGAGACCGCAACGGGGCCGTCGCCCGTCTCCCTCATCGATTGA

Upstream 100 bases:

>100_bases
GCCTCTCGATAGTTTCGCCAGTGCGAATCGGAAAGGCAGGCAACGGCTCCACCTTATCTTGAGACAATCGGGACGGATTG
GCTTTTGAAGAGGGTGGATC

Downstream 100 bases:

>100_bases
ACGACAGGATCACAGATGGACCAGCTCCTTCTCTCCCGGCTGCAGTTCGCCTTCACGATTGGCTATCACATTCTGTGGCC
GGCCTTCACCATCGGCATCG

Product: oxidoreductase alpha (molybdopterin) subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 797; Mature: 796

Protein sequence:

>797_residues
MAKQRPDGIRAYEDPAGGWGALKALAVALKDQQLVVEGIPTLLKQNQPEGFDCPGCAWPDPKHTSAFEFCENGAKAVTWE
STPKRVGPDFFAQHTVTSLWECSDYWLEDQGRLTHPMRYDAQTDKYEPVDWQVAFDDIAAKLDALDDPNQLELYTSGRAS
NEAAFLFQLFGRQFGTNNFPDCSNMCHEPTSVGLPRSIGIGKGTVTLDDFDKAELIISMGHNPGTNHPRMMTPLRNASRR
GVKIIVLNPLKERALERFEAPQAPLEMATTSSTPIASCYFQVKVGGDAAALKGICKALVAADKVARAADLAPLLDHTFIV
GHTAGFDALVDDLEGCSWSAIERASGLPRADMERIAADYAASNATIVCYGMGITQHVTGTANVQQIANLLLLKGNIGKPG
AGICPLRGHSNVQGDRTVGITERPSEAFLDRLRDVFGFEPPRAFGHSVVDSIAAMRDGRAKAVICLGGNLAMAASDPQAC
FKGFRRLDLAVHLATKLNRTHLLTSKTTYLFPVLGRTDSDIQASGRQALTVEDSMSMVHASRGFLTPPSDQVRSEVAILA
GIAKATLRSKSRVDWDALAGNYDLIRDAIEEVFPDFEAYNDRIRKPGGFQLPNSAAMRIWNTPTGKANFAIFAGLEEDET
STDRDVLRMTSLRAHDQYNTTIYGLNDRYRGVFGRRDVLFLNPKDLARLGFAEGDVVDVATALDYARPDRVVQALTLVSY
NLPDGCCASYYPEIQPLVALEFRDPECLTPSYKSIPVKVTAARAPLAADRAVGRDGIVGREPGVETATGPSPVSLID

Sequences:

>Translated_797_residues
MAKQRPDGIRAYEDPAGGWGALKALAVALKDQQLVVEGIPTLLKQNQPEGFDCPGCAWPDPKHTSAFEFCENGAKAVTWE
STPKRVGPDFFAQHTVTSLWECSDYWLEDQGRLTHPMRYDAQTDKYEPVDWQVAFDDIAAKLDALDDPNQLELYTSGRAS
NEAAFLFQLFGRQFGTNNFPDCSNMCHEPTSVGLPRSIGIGKGTVTLDDFDKAELIISMGHNPGTNHPRMMTPLRNASRR
GVKIIVLNPLKERALERFEAPQAPLEMATTSSTPIASCYFQVKVGGDAAALKGICKALVAADKVARAADLAPLLDHTFIV
GHTAGFDALVDDLEGCSWSAIERASGLPRADMERIAADYAASNATIVCYGMGITQHVTGTANVQQIANLLLLKGNIGKPG
AGICPLRGHSNVQGDRTVGITERPSEAFLDRLRDVFGFEPPRAFGHSVVDSIAAMRDGRAKAVICLGGNLAMAASDPQAC
FKGFRRLDLAVHLATKLNRTHLLTSKTTYLFPVLGRTDSDIQASGRQALTVEDSMSMVHASRGFLTPPSDQVRSEVAILA
GIAKATLRSKSRVDWDALAGNYDLIRDAIEEVFPDFEAYNDRIRKPGGFQLPNSAAMRIWNTPTGKANFAIFAGLEEDET
STDRDVLRMTSLRAHDQYNTTIYGLNDRYRGVFGRRDVLFLNPKDLARLGFAEGDVVDVATALDYARPDRVVQALTLVSY
NLPDGCCASYYPEIQPLVALEFRDPECLTPSYKSIPVKVTAARAPLAADRAVGRDGIVGREPGVETATGPSPVSLID
>Mature_796_residues
AKQRPDGIRAYEDPAGGWGALKALAVALKDQQLVVEGIPTLLKQNQPEGFDCPGCAWPDPKHTSAFEFCENGAKAVTWES
TPKRVGPDFFAQHTVTSLWECSDYWLEDQGRLTHPMRYDAQTDKYEPVDWQVAFDDIAAKLDALDDPNQLELYTSGRASN
EAAFLFQLFGRQFGTNNFPDCSNMCHEPTSVGLPRSIGIGKGTVTLDDFDKAELIISMGHNPGTNHPRMMTPLRNASRRG
VKIIVLNPLKERALERFEAPQAPLEMATTSSTPIASCYFQVKVGGDAAALKGICKALVAADKVARAADLAPLLDHTFIVG
HTAGFDALVDDLEGCSWSAIERASGLPRADMERIAADYAASNATIVCYGMGITQHVTGTANVQQIANLLLLKGNIGKPGA
GICPLRGHSNVQGDRTVGITERPSEAFLDRLRDVFGFEPPRAFGHSVVDSIAAMRDGRAKAVICLGGNLAMAASDPQACF
KGFRRLDLAVHLATKLNRTHLLTSKTTYLFPVLGRTDSDIQASGRQALTVEDSMSMVHASRGFLTPPSDQVRSEVAILAG
IAKATLRSKSRVDWDALAGNYDLIRDAIEEVFPDFEAYNDRIRKPGGFQLPNSAAMRIWNTPTGKANFAIFAGLEEDETS
TDRDVLRMTSLRAHDQYNTTIYGLNDRYRGVFGRRDVLFLNPKDLARLGFAEGDVVDVATALDYARPDRVVQALTLVSYN
LPDGCCASYYPEIQPLVALEFRDPECLTPSYKSIPVKVTAARAPLAADRAVGRDGIVGREPGVETATGPSPVSLID

Specific function: Probably involved in acid resistance [H]

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=752, Percent_Identity=55.5851063829787, Blast_Score=867, Evalue=0.0,
Organism=Escherichia coli, GI3868721, Length=697, Percent_Identity=23.8163558106169, Blast_Score=162, Evalue=6e-41,
Organism=Escherichia coli, GI3868719, Length=388, Percent_Identity=25, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI3868720, Length=475, Percent_Identity=23.5789473684211, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 86640; Mature: 86509

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQRPDGIRAYEDPAGGWGALKALAVALKDQQLVVEGIPTLLKQNQPEGFDCPGCAWPD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PKHTSAFEFCENGAKAVTWESTPKRVGPDFFAQHTVTSLWECSDYWLEDQGRLTHPMRYD
CCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECC
AQTDKYEPVDWQVAFDDIAAKLDALDDPNQLELYTSGRASNEAAFLFQLFGRQFGTNNFP
CCCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC
DCSNMCHEPTSVGLPRSIGIGKGTVTLDDFDKAELIISMGHNPGTNHPRMMTPLRNASRR
CHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCEEECHHHHHCCC
GVKIIVLNPLKERALERFEAPQAPLEMATTSSTPIASCYFQVKVGGDAAALKGICKALVA
CEEEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHH
ADKVARAADLAPLLDHTFIVGHTAGFDALVDDLEGCSWSAIERASGLPRADMERIAADYA
HHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
ASNATIVCYGMGITQHVTGTANVQQIANLLLLKGNIGKPGAGICPLRGHSNVQGDRTVGI
CCCCEEEEEECCCHHCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCEEECC
TERPSEAFLDRLRDVFGFEPPRAFGHSVVDSIAAMRDGRAKAVICLGGNLAMAASDPQAC
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCHHHH
FKGFRRLDLAVHLATKLNRTHLLTSKTTYLFPVLGRTDSDIQASGRQALTVEDSMSMVHA
HHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCHHHCCCEEEEEHHHHHHHHH
SRGFLTPPSDQVRSEVAILAGIAKATLRSKSRVDWDALAGNYDLIRDAIEEVFPDFEAYN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHH
DRIRKPGGFQLPNSAAMRIWNTPTGKANFAIFAGLEEDETSTDRDVLRMTSLRAHDQYNT
HHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
TIYGLNDRYRGVFGRRDVLFLNPKDLARLGFAEGDVVDVATALDYARPDRVVQALTLVSY
EEEECCCCCCCCCCCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHC
NLPDGCCASYYPEIQPLVALEFRDPECLTPSYKSIPVKVTAARAPLAADRAVGRDGIVGR
CCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCC
EPGVETATGPSPVSLID
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKQRPDGIRAYEDPAGGWGALKALAVALKDQQLVVEGIPTLLKQNQPEGFDCPGCAWPD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PKHTSAFEFCENGAKAVTWESTPKRVGPDFFAQHTVTSLWECSDYWLEDQGRLTHPMRYD
CCCCHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECC
AQTDKYEPVDWQVAFDDIAAKLDALDDPNQLELYTSGRASNEAAFLFQLFGRQFGTNNFP
CCCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC
DCSNMCHEPTSVGLPRSIGIGKGTVTLDDFDKAELIISMGHNPGTNHPRMMTPLRNASRR
CHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCEEECHHHHHCCC
GVKIIVLNPLKERALERFEAPQAPLEMATTSSTPIASCYFQVKVGGDAAALKGICKALVA
CEEEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHH
ADKVARAADLAPLLDHTFIVGHTAGFDALVDDLEGCSWSAIERASGLPRADMERIAADYA
HHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
ASNATIVCYGMGITQHVTGTANVQQIANLLLLKGNIGKPGAGICPLRGHSNVQGDRTVGI
CCCCEEEEEECCCHHCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCEEECC
TERPSEAFLDRLRDVFGFEPPRAFGHSVVDSIAAMRDGRAKAVICLGGNLAMAASDPQAC
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCHHHH
FKGFRRLDLAVHLATKLNRTHLLTSKTTYLFPVLGRTDSDIQASGRQALTVEDSMSMVHA
HHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCHHHCCCEEEEEHHHHHHHHH
SRGFLTPPSDQVRSEVAILAGIAKATLRSKSRVDWDALAGNYDLIRDAIEEVFPDFEAYN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHCCCHHHHH
DRIRKPGGFQLPNSAAMRIWNTPTGKANFAIFAGLEEDETSTDRDVLRMTSLRAHDQYNT
HHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
TIYGLNDRYRGVFGRRDVLFLNPKDLARLGFAEGDVVDVATALDYARPDRVVQALTLVSY
EEEECCCCCCCCCCCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHC
NLPDGCCASYYPEIQPLVALEFRDPECLTPSYKSIPVKVTAARAPLAADRAVGRDGIVGR
CCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCC
EPGVETATGPSPVSLID
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]